G14218


Basic Information

Item Value
gene id G14218
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24615787 ~ 24618345 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17619
ttttaacttctttattttatttttttacttaagtCTACATGAGTTCCTGTCACAGACTTTAAGGACACCTAGTGCAATTATAGActtctttcatttgaaacacatCACAGGAACTCTAGATTATGTACAAAGTCTTTAATTGAGGCCGTGTTGAAAATTAACAATAtgagtatatatataacaatatataagaacatataaCATATAACGTATAACAGATTTAGGGTCCATGTGTACAATATCAGAACTGAGGATGTGAATGagatattgatgttttaatcctggGGTCAACATATATTAGATCAAGAGCAATCAcaccagtttattttaaaatgtgacccTGAAAATTAGTTGCATAACACACCTTGTAATTGATCTATTTCAGATCATTTTAGTTCACTGgccttttttaaaacatttgtgtccctttgttttccttttagtaTGTAACATATGGTGAGACAtaccatattattttaatatttgtaatttatcaGTTAGATACCTTCATGTTTATGACTTGGCGTGTGTGACGATGGTTAACAtagctttacattttgtttcagctgcCCTCTTCTGGCCTCTACCAGACATTGCAGGAGAATGAGTTGCGGAGCTGCAAGACAAGGACTCCAATGCTTGTCCAGTTTGCTAGTGTTAAAACTTGCCAGTTTCTCCTTTTTCTATTCGTTGTCCCACACAGATGACCACCCTGTCTCAGATAATTAAAGTGTCAGTGTATGGCACAGCAGAAGgaaacataatattattattattattattattattattattaataataataataataatgggtcaaTTCATATGGCTTATTGCCTTGGTTGGAAAGTCAAAAATAGGTAcggcaaatacaaatacacatatagAAAGATAGAAATAAACTAATCAGAGGAAGTTAATCTAAGTTaatctgttgttgttgatctAAATTATTAACTCCAGATCAGGTTTTCAAAGTGTTACGGCTGTGTATGTGGGCGTCAGAATGACTCGTACTCTGCTGCTTGCACGGCGGAGGCTGGCTGCACTATATCAGGCACAGGCTCGGTGCCTAAGCCTTACACATAAAAGTACAGTAGATGTTCATGGCTGATTGCCAAGCTCCTCTGGCTGACTGTAAAACCTATTATACAGTACGACAGACTGGTCACTTCAAAGGAGCCAGGAACCTGCTTGGTGAATAAACTGACCGACTccacatgtttttaattctctCTGCCTGGCAAGACTCTCACTCTTCGAACTTCTcaatcaagaaattaaaattgaaaacagcTCTGGCACAACAGACCCCAGCGCTCTGCCCTTCTGGCAGCAGAACCTCCATTGGCTGGAAATGGCATTCTATAAACttgagttttatattttatatatagtattgttaaaaaaaagattacagtTAAATCTACACCGCTCTTTTAAACCGAGAGCATAGCATGTATTCAGGAGGGGTTATGGGACAAAAAGAAGAGGATACTCACACTGAGAGTGGATGGCCACAGCAGTGCCCTGAATTTCAAAGCTGCTGTATTGgactacaaatgtatatttctgtgcCGAATTTCTGTGCACCAGGCACAACTCTCAGCACCGACCCAGACCTGTGTCAGAAAGCTACCTGAAAAACACCTCAGCTTTTCATGTCTGCGATCCGGATTATTCTCCTCCCTCTAACGCTTCCAAACAACAACCTGCTGTCTGGCGCTTGATGATGTTAAAGCCAACAAGGCGAACCTCATGTCCAGCAAAGGCAGCCGGTACCCATCTCCAATACATTCCTTGGGGGACAGGAAGTCGCAGTTGTCTGGTGTGCAAATGTTCTCCTTTACCAGTTTCCTGTTCCTTAAGAAAGCCTTGAGGACTTTACAATATcgattttaaatggatttattAATGGTTTGTATCTCAAGTCTTAAATGAATCCTTCTCTATTAAGGTGGATTATACTCTACCTACATACtgttacaaatttaaaaaactaaacaaaataaataaatccgtATTGGTTGCACTGACACAAAAGTTCACTTCTTATTCTTACAGAACATCAAGTAGAAAACTACCTAAACAAAGGCAATTACAAAAATGCCATAaacactataatatatatataatataccatAAAAATGCTAAAGTAGATTTTAATATTAAGACAGTTGCTCAATTTCTTTGCTGAGGTTACAGTGTATTGCGGAGTCAGATGTCCAAGTTGCAACTGCTGGCTCCTGGCAGGTGAACTAATCGCTACCAGATTCGACAGGACTCTGAGCCGCGGTTCATCACGGAGGTCTCTGGGCAGTTGAAGGCTTTTCTGAACTCCTCATAGTTGCTCATGGCCCCTATTACTCTggatgaacagaagaaaaaagaaaaaaagtcgaTCACTttgaacaacaacagaaaaacaaacaaacaacaggaaaaaattgaaaaaaaaaaacataaaatgtccAGAATAAGAAACAACAGTTCAAGTGTCAGTTGTGCCTGGAACGGAGTCAAACGTTTTCAATCCATGTGGCAATAAATCACGCGGTG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17619 True 2559 lncRNA 0.38 1 24615787 24618345

Neighbor

gene id symbol gene type direction distance location
AMCG00016539 NA coding downstream 65662 24548377 ~ 24550125 (-)
AMCG00016534 NA coding downstream 222932 24375867 ~ 24392855 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding downstream 239980 24372069 ~ 24375807 (-)
AMCG00016532 NA coding downstream 252749 24355911 ~ 24363038 (-)
AMCG00016530 NA coding downstream 261588 24338444 ~ 24354199 (-)
AMCG00016546 LOC108276628,LOC107663623 coding upstream 102844 24721189 ~ 24739122 (-)
AMCG00016545 NA coding upstream 144224 24762569 ~ 24786410 (-)
AMCG00016550 NA coding upstream 171803 24790148 ~ 24800194 (-)
AMCG00016551 NA coding upstream 184391 24802736 ~ 24809912 (-)
AMCG00016552 NA coding upstream 257519 24875864 ~ 24878227 (-)
G14214 NA non-coding downstream 9466 24606108 ~ 24606321 (-)
G14213 NA non-coding downstream 13780 24601698 ~ 24602007 (-)
G14181 NA non-coding downstream 190289 24425164 ~ 24425498 (-)
G14171 NA non-coding downstream 278960 24335944 ~ 24336827 (-)
G14093 NA non-coding downstream 450367 24165157 ~ 24165420 (-)
G14222 NA non-coding upstream 64720 24683065 ~ 24684535 (-)
G14245 NA non-coding upstream 98381 24716726 ~ 24780266 (-)
G14311 NA non-coding upstream 286776 24905121 ~ 24906546 (-)
G14400 NA non-coding upstream 503745 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 786550 25404895 ~ 25405101 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 48831 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 292329 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 730529 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 753048 23841062 ~ 23862739 (-)
G13969 NA other downstream 915532 23699149 ~ 23700255 (-)
G14305 NA other upstream 262803 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 389629 25007974 ~ 25015343 (-)
G14392 NA other upstream 462223 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 646427 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 794971 25413316 ~ 25420371 (-)

Expression


Co-expression Network