G14587


Basic Information

Item Value
gene id G14587
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25973534 ~ 25979563 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18117
tatttttcaatttaatttagagTTGGTTCTGATTTTGAAGCTCTTTTCAATACAACCACTGGATATACACAGGTTATTCATTCGCAAagaataaaattataatatgcaATGTGGCAGGAAGGGAGCACCACTGAGCATCAGGTCCCTGGCATGCTGGCCAGATGGGGAGGGTCTGTAGCAGGGTGCCCAACTCTGGTCCCGGAAAGCCACACTTCTGTTAATTTCTTAAGTGACTTATTTAGCTTAATTAGTCTAAATGACCATGTGTTCAAGGTATTCAGTGATTTATGATCTAAAGAGACATATAAGGATTGTGGATCTCCAGAAACAGCGTTGCCCCACCATGGGGCCTCTATAAAGGCCCTATAGGAGAATCCACCTGCTGTTTAAGGTATAAAGCCACAGATGAATTATGGAAGTTGACACACGGCTTGCAGGAAATAAGGAAACCTCAGATCCACACTGTCTGAATGGAAAGTCTTTGTGTCCCTCGTCAGTCAGTCTGACATTCCACCACCCTGCCCCTAGACCCCCAACCCCTGACCCTCTCTTTGTCTCACCCTCTTTATCTCAGGCTCTCAGAGCTGCTATATTTACCCTCACTCTACCACACTCCATCCTAGCTGATCCACTCATGTCCTCACACATACAGCACACAAAGCCCCTGGAGTTAGACATGCAGACTCACACAGACACCATGGGAATTTGTTACAGTCGAGCCCTGTGTCTCTGACAGTGTTCCTACTTAGAAACAGACTGTTGCTCTCACAGGCACAATCCCAAGCtctattcctttttcttttctctctgcaaAACAGTCAACCTAGCtggcactctcacacacacaatctctgcAGCACCACCTGACACACAACCCCAAAGACACACTGAACCTCATATTACAGCTGCACAAAATCAATACTTTCTCATAAAGTCACAGataagaaatgtgaaatattactTTTAGCTGAAACTGTATCACACaagaataacaacaagaaacaaaaccaaaaacaatgttAAGCATGACTTTTCTCACTCTCCAGATGAATGCTGTTGATTTCTACAGTCTTAGTAGCCTGTTCTTTATGGTTTCAGTGTTAATCCTCTCAGGCAATATTATTCTAATTCCCCTAGCAGAAAACATCAGCGCAATAACTGTACAATCACGCACTGTAACGCCAGacatttacacatacatacaaaaggcaaacaatctCAAAGGCACCAGATTTGGggcaattaaaaacagattggaTATTGTCTGGATATTATTCAGTATTCACCCAAGATTATTTTGGCACACAAATTGGTCATAATCACCTTACTAAATGGTCCAGGCATCAGTTTTGCCCTCACACCCTTCATTTCTGACCTTTACGAGTTTACAGACTTAGAAATTAACTGGACATTCTTCCAGAGTTCCAGGACACATGGGAATACCGATATCAGATATCAGGTGGAGCTGACtaaaacagaacatttattgcaacatttatttattggaacCACAGAAATGTCTATTACATCATATTTACCTTGTGAATTGCTTACACAGACTTTGACACCTGCTAACTGTTATCAGTTTAGCTGGGGGAGGGGTCACTATCTGTGTTAcctatgtttaatttattaactaattaatgTCGATTCTTAAACTAACATTTGCCTTGTACCATTATATTCCATGAAACTGACAAATGAGACCTGTTTTTCAGATATGTGCCTTTAAGCTACATGTTCTAATctggcacacaaaaaaaatctttaaaccCCTTCACCGCAAAGGTTTTTGCTTCCAgcgaaagcaaaacaaatggtaACTTGCTTAACAGCCTGGTGTGATGAATAATTAATAGATTTAATCTaccaaaacaaaagtttaaaaggCTTGTTTTAGTTGTGTGATTTCTCACTAAAACATACTCATCCACACGGCATATCCACAGGCACAAAGATACCTCCTTGTGATTAGGCGGTAAGTATGAAGTAAAACAGGCCAGGTAAAAGTGATGCTGAGTAAaaagatggaggaggagggccTCTGTGGGATAGCAAAAGCAGTTTCCCAATTGAACTATGCTGACCTGCATTAATAATCAGACCATTTCTTCTGAACTCACAACGCTGTAACTCCATAAACGATCTTATGGATCTTACGGGAGCTGTCTGTAAATCAAACCACTGTGGGACCACTTAGAAACATCCTTGCCTCTGCCTACTTCAAGTTGGCATTGAGTAGGGTGACCAAATTACTCCATAATCCCTGGGCTACTTTAGGACAAGATTGTGATGTTAATATTTCcttgaaacataaataaatgaacatgtaAAGTTAGAACATTCATCCATTTACATCAAGTTATTCTAATTTGATTGGAATAGATCTAGAAAGGACTTTTAGGTGCCAAGTATGCCAAATTCTTAATTGTGCTCTGGTAGTTGccaatgtgcatgtttttttctgatcacTTTAGAATCACTGATCAGCACTTGATTCGGTCTGGTTGGTCCCAGGAAGATTGAAAAAGTTTTTGGTGTACAccatttatcatttaaaatcagTATTTTTCTGGTCAAATCTGTAATAATTTGGGAGTTCATTTCATTCAGTTTTGGTGAAAGCTCCACGTGTCTATGGGATTATATAGTAATATGGTCATCCTAGTCTGAGTGAAGGAGCATTAGACTAATACAATCCCAGTCCATATGCGGACCGATTGTAGTCGCTGGGTCTCTAGGAAGAAACACAGACATGCAGCGTTAGCAGACAGATCATACGACTGACACAAACCCTTTGGGATCAGGTAGTTTGGTTACGTATTGCAAATAATGGTGAAAGTGGATTTTTTGAGCACTGGTGAAAAAGGTTTGTACAGCAGAACAATGAGCAAACTATAATCTCAACAGCGTAGGAGGACATTTTAATAAGGTCatcaaatatatgtaatatccattcaattaaacaattatactaCAGCAATGAAAAGGCATCTCTTCCTCTGTGGACAGTGTACCTTCAAGGCAACATTGGGACAGGAGTGTGGATCTGAGGCCTCAAGTGGAAACCAGGGTGAAGTTCGGCTCACTATTAGATGGCAGCCaatttaagaaaacagaaaccTCCTCCATCCGGGCCTGCTGAGCAATATTGTGCGTGCATGCACACATTGGCACACAGATCACCTCAGCCCCCTACCTAGCTCCTGAACAGCAAGACAccgacacacacatacacgggtgctgccacacacacagacacaccccaGAACAACTGCAAGCACATGGTTTCTgtacagacacgcacacacacacacatacacagcacaCTCTGCAAGAACAATGGGGTCTTCTGGTCCGAGACCCCCTTCACAGCCCCTTCCAGTCCCCGCTAAAATAAAGGCAGTCCAGGTGAATGAGAATAATCCATTTGGTCAAccaccctccccacccccaccccctaaaAAAATCATAACACACCGATTAATATGGATAGAAATAGGTCTCCCATGGCACAGCAGTTccgttgcatttatttttattttcatgacacCCGTTTCATGTGTTTTCATGTCAGTGCTATCATGTGAATTGCTCTGATGATGAAGAGCAAATATTTCAACTCCACTTTTATGAAAACTATCTTCAAAAGAGATCGCAAAACTTCAAGGTTCCACCATCGGTGTTTGTGTAAATACAGGACCCCACAGCCCATAACACATTAACCAACCGAAGCTACTGTGTAGCCCGAGACCGATTTCCAACCTCACGTAAGGAAAGCAGTGTTAATCAATATCAGAACAATAATCATGAGAAAAGAAGCAGCAACGAAATTCATAGCAGGCAAAACATCTCAAAAGGAGGACAACAGAGACTCAAGTCACCCATCCAAAAGAGCCCTCTTGTTTCTTCCTACTCAAAGGCACGTCAGTCCCTACTGCAGGACAGGATCTCAATCTGATATTGGACTTTGAAGGTTTCATATACACTCATCAATAGAATATGAAATAGTAacttactttatatataaacattacaaattctatAGTGGAGTGTCAAACTCCAGTCCTGTCCTGAGTCCTGAGTGGACACACTGTCTcttgatgtattttcttccaacaggagctctcaattactcagttttctttttctgagaCTTATGTaagattttcacatttaatttcagctgatcacttaaattatgtttattactCAAGATATGGCATCCTCACAGTATTTTTGAGTTTGGAGACAAGAGCCTCCAGGACCGCAGATACCCCTTTTATAgatctttacaaatattttttttaagaactgaCAATAATTTAATGACATGTAAGCAAACAAATGATCAGTTCAGTTAAGGGTTTAATTTGATAATTAAGCTTGATGATGCTGATTGCACAGGAGACAGTGCTGAAGGTCTCTGGCTCAGTGCTGGACTGCAGAGAAGGACACAGTGGAGAAGGCCACCCTCTACTGGCAGCATTGCACAACTGCATTTCAGTGTCCCTTAAAGACAGATCGTGGGAAGCTACAATCCAGTGGGTTTCACATGTCCTTTCATTATCTTTACAAGACTTGGAGCAATTTCATTTTGATCAGATAAACAGGCAATTTAATTCATTAAGTAATTCACAAATGACATGGACTGAAAATCTAACTCCCTGTCTGCAGGCTTCCATGATCATATATAGCCACTCCAGGCCTTTAAGATTTAACAATTGCCTTCCaagttatataaaaatcataCGAGTCATTTAGAGTACATTATAAGTTAACTATAAAACCTGTTGACTCTCTAGGACTAAGGATGGCTGCCCCTCAGTGTAAGCTGAAATAATCACATAACAATAAAACTACTCTTcggtcaaagaaaaaaaaaaaaaagaacattgcaGTACAGTGCATGTTCTATTTCATTGATAGggccagccaatcacagtgcaCCTCATAAGTGAGGTCATTGGCAAAGTACTTTGTAATACATCACATGACCATATTTAGTCAATGGAGCTCCTCACAGTGCAGGAAAGATTCTGACAATTTGAAAGGGGTTAAGGCAAGACACAGCCCAGGTCCAACCATTGACAAATCCGTCTCGGTGTAAACCCAGTCTACAACTGTCTCAGTGGCTGTACCCCCGTCTCCTACACTTGTGCTAATTGAAACGTCATCTCTAAGCGCTTGCACATTTTGAACCTCCTCTCTCACTGTGTTCAATTCCAGAGCTTCTGCAGTACTGACTCACTGACAGGCAACTGTAAACATAAGaagcacttaaaataaaagcattgaaCAGAAAagagctattattattataactgggAAGGGGACAGGAAGTTTCAGAGCGGATCTCTTCTTCGACTCGCAGTAGCCTCAACACCGGAGCCTCTTCCAACGCAGGATCCTGCACAGTATCACTCAGAACCCGCCTTGTACGCCAAACTACCAGGGCACCTAATAACCTTTAACTCGTATAACTTAAACATCAAACTGTTATGTAACGAGAGGCCTGATCTACTGGTTTCTCTGTACTGTAAATCCCCAGCTGAACTGTGCTAAACACTGGCTGACTAGGTCTCTGTTGTTCTCTTCAAGGCAAAGCTCAGTGAATGCAAATAAGATCAAAGACAAAAAGTGTGATGATGCAGATCATtgcccaccccctcccctcccctccccgcCCCTTCACACccacaaaacataacaatacaaaaagtaaaaggtAGAATTCGGCAACAAAACTCAATTCAAGCAGGAAAAAGTGCAGTTCCTGGGGAGACTGATCCCCACCAACTTCTGAGAGCTACTGCGACCCCTGATTGGAGGGCTCCCCAGGAAGCGGTGGGCAAAGTGGCGTAGTCTCTCCTACTCCAGCTTAACCCCAGCCTTCTCTGTGTTGAGAAGGTGCAGACTGTCATCAATCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18117 True 5932 lncRNA 0.41 2 25973534 25979563

Neighbor

gene id symbol gene type direction distance location
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 147688 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 246987 25706081 ~ 25726547 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 270207 25676569 ~ 25703327 (-)
AMCG00016597 NA coding downstream 331201 25611563 ~ 25642333 (-)
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding downstream 489824 25449909 ~ 25483710 (-)
AMCG00016614 NA coding upstream 125353 26104916 ~ 26117450 (-)
AMCG00016615 NA coding upstream 172048 26151611 ~ 26155450 (-)
AMCG00016624 LOC107733370 coding upstream 232823 26212386 ~ 26215060 (-)
AMCG00016629 LOC108438403 coding upstream 325352 26304915 ~ 26309363 (-)
AMCG00016628 NA coding upstream 359930 26339493 ~ 26343614 (-)
G14578 NA non-coding downstream 51986 25918030 ~ 25921548 (-)
G14517 NA non-coding downstream 298334 25672304 ~ 25675200 (-)
G14507 NA non-coding downstream 364475 25604780 ~ 25609059 (-)
G14496 NA non-coding downstream 427809 25543046 ~ 25545725 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding downstream 453438 25516989 ~ 25520096 (-)
G14650 NA non-coding upstream 118165 26097728 ~ 26098972 (-)
G14723 NA non-coding upstream 295614 26275177 ~ 26303459 (-)
G14765 NA non-coding upstream 415369 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 445469 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 450892 26430455 ~ 26468099 (-)
G14534 NA other downstream 219062 25752995 ~ 25754472 (-)
AMCG00016591 NA other downstream 553163 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 696056 25264772 ~ 25277478 (-)
G14392 NA other downstream 889835 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 958191 25007974 ~ 25015343 (-)
G14637 NA other upstream 101940 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 167947 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 176958 26156521 ~ 26159922 (-)
G14676 NA other upstream 202181 26181744 ~ 26184778 (-)
AMCG00016623 NA other upstream 259519 26239082 ~ 26241390 (-)

Expression


Co-expression Network