G14816 (LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907)


Basic Information

Item Value
gene id G14816
gene name LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26427339 ~ 26520397 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18405
ACCTTTTGACGCAGCTCATCGATGATCTTGTAGTAGTGGCTGTAGTCCTTGCTGACCGGGGCTGTCTTGCTGTACCAGTCCCGGATCTGTTGCTCCAGCTGGGCATTGGCCTTCTCCAGGGAGCGCACCTTCTCCAGGTAGGAGGCCAGGCGGTCGTTCAGATGACCGAGAAGGCAACCATGCAGAACCTGAACGACCGGCTGGCCTCCTACCTGGAGAAGGTGCGCTCCCTGGAGAAGGCCAACGCTGAGCTGGAGCTGAAGATCCGTCAGTTCCTGGAGCAGAAAATCACCCCCAGCGGCCGTGACTACAGTGCATACTACACCACCATCGCTGACCTGCAGGGCAAGatCCAGGATGCCACCCGTACCAATGGAGGGCTCTACCTGAATCTGGACAATGCCAAGCTGGCCGCTGATGACTTCAGAGTGAAGTGAGTGCCAGTCACAAACCCCCCATATATCCCCCAAC
>TU18407
GGGCAGCATGGGGCGAGGCTGCCCAGGGAGGAGAGCGGTGGGGAGGCGGGGGCTCACCAGGCTGAGCTGGGACTGCAGCTCAATCTCCAGGCCCTGCAGGGTCCTCCTCAGCTCGCTGATCTCACTCTTGGACGACTGGATTGCTTCTGTGCTGCCGCTGACCACCTTGTTGAGCTCATCAACTTGGCCTTGTACCAGTTCTCCATGTCTCTGCGGTTCTTCTCGGCGATGCCCTCGTACTGCGCCCGGATCTCATCCAGGACGCGAGACATGTCCTGCTGGGGCGCTGCGTCTACCTCCACGTTGACTGAGCCGGACATGCTGTTACGCAGAGCTGCCAGCTCCTGCACCTCATGGTTCTTCTTGAGGAAGATGAGCTCCTCTTTCAGCCCTTCAATCTGCATCTCCAAGTCTGTCCTGGCCAGGGTCAGCTCATCCAGCACCCTCCTCAGCCCGGCGATGTCTGCCTCCACCGACTGCCGCATGGCCAGCTCGTTCTCATATTGACTCTGAAGTCATCAGCTGCCAGCTTGGCATTGTCAATCTGCAGGATGATCTTGGCATTGTCCATGGTGGCTCCATGGACTTTTGACGCAGCTCATCGATGATCTTGTAGTAGTGGCTGTAGTCCTTGCTGACCGGGGCTGTCTTGCTGTACCAGTCCCGGATCTGTTGCTCCAGCTGGGCATTGGCCTTCTCCAGGGAGCGCACCTTCTCCAGGTAGGAGGCCAACGCTGAGCTGGAGCTGAAGATCCGTCAGTTCCTGGAGCAGAAAATCACCCCCAGCGGCCGTGACTACAGTGCATACTACACCACCATCGCTGACCTGCAGGGCAAGatCCAGGATGCCACCCGTACCAATGGAGGGCTCTACCTGAATCTGGACAATGCCAAGCTGGCCGCTGATGACTTCAGAGTGAAGTGAGTGCCAGTCACAAACCCCCCATATATCCCCCAAC
>TU18409
ACCTTTTGACGCAGCTCATCGATGATCTTGTAGTAGTGGCTGTAGTCCTTGCTGACCGGGGCTGTCTTGCTGTACCAGTCCCGGATCTGTTGCTCCAGCTGGGCATTGGCCTTCTCCAGGGAGCGCACCTTCTCCAGCGGCCGTGACTACAGTGCATACTACACCACCATCGCTGACCTGCAGGGCAAGatCCAGGATGCCACCCGTACCAATGGAGGGCTCTACCTGAATCTGGACAATGCCAAGCTGGCCGCTGATGACTTCAGAGTGAAGTGAGTGCCAGTCACAAACCCCCCATATATCCCCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18405 False 471 TUCP 0.51 3 26427339 26518279
TU18407 True 959 TUCP 0.47 7 26427339 26520397
TU18409 False 310 lncRNA 0.56 3 26427339 26518279

Neighbor

gene id symbol gene type direction distance location
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding downstream 45610 26380048 ~ 26381729 (-)
AMCG00016627 NA coding downstream 52737 26373019 ~ 26374602 (-)
AMCG00016628 NA coding downstream 83725 26339493 ~ 26343614 (-)
AMCG00016629 LOC108438403 coding downstream 117976 26304915 ~ 26309363 (-)
AMCG00016624 LOC107733370 coding downstream 212279 26212386 ~ 26215060 (-)
AMCG00016645 NA coding upstream 135191 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 141689 26662086 ~ 26664301 (-)
AMCG00016649 NA coding upstream 201390 26721787 ~ 26732090 (-)
AMCG00016648 NA coding upstream 223187 26743584 ~ 26749062 (-)
AMCG00016651 tbkbp1 coding upstream 296411 26816808 ~ 26822326 (-)
G14775 NA non-coding downstream 2089 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 31914 26394932 ~ 26395425 (-)
G14723 NA non-coding downstream 123880 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 328367 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 405076 25971786 ~ 26022263 (-)
G14832 NA non-coding upstream 2407 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 220688 26741085 ~ 26742338 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 458761 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 723569 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 743316 27263713 ~ 27265603 (-)
AMCG00016623 NA other downstream 185949 26239082 ~ 26241390 (-)
G14676 NA other downstream 242561 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 267417 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 277796 26147510 ~ 26149543 (-)
G14637 NA other downstream 344172 26081503 ~ 26083167 (-)
G14843 NA other upstream 48272 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 62129 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 106310 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 474776 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 745490 27265887 ~ 27279334 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020252 krt97 coding NC_007133.7 CM002906.2 11756040 ~ 11759106 (+)