G14943 (nfe2l1,nfe2l1b,LOC107565927)


Basic Information

Item Value
gene id G14943
gene name nfe2l1,nfe2l1b,LOC107565927
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26979158 ~ 26983486 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18569
CTGAAACCTGCCACCCTACAACATGCGTCTGGGAATGCTCCTGAAAACACAAATGCCAGTTTGGTTCGCGTACTAGAGTAACCATGGGAATGTGACTGAACATGCCCTTCTCCACCCACCCCCTTTGGTCCTGTCTGTTCACCCAGAGGAGAGCGGCAACTCCTGCAGCAGCGCCACAGCCTGGCCCGGCATCCAGAAGGCCCACACAGCAGAGGCTAGGAACAGCACGGAGGCTGCGGCTCGTGTCCAGGCCTGCCGGTGCTGTGGCCACTTTAGCCCAGTGATTAGGTAAACCTCTTCAGCACGCCACCGCACAGCTGCACCAGGAAGACAGACGCCTCGGGCAGCGGCCGCAGACTGGACTAACTCTCCAGTAACTCTCTCCTGGCTGACCTCTCTCACCAACCTGCCCCCACCCCTGGCTGCCCACCTGATGTAAACTAATCTTGCCAAGGATTGCCCCTTCCCGTCCATCCTGCCTCCTGCCCAGCTGTGGACAGGTCCTACCTAATTTACACCCATGACATTTATTCCATCGCATGCAGCTCTTTGCCTTGTGCAGCACGTTGAGACCATTCAGACTATTTTTTAAAGAGCCTATACACAATAGAAGTTATTATCATTACTGTTATTTTCCTGCCCTGCTTCACGTTTCCCTCTCCTAGCTGATGACATCACAAGCCAGGCTGGTTTCACTCTCTGTTCCTCTGCGGTACGCTGGCCAGCCCACACTATCCATTTATGTATACTCCCTCTATCAGTTACTGCGTGATGCTGCGTTCCGCATCGCGTTTCACATCATACCCTGTCCAGTGCGGAGCGTTTCACACTACAGATTTGTTTCGGTTTTAACAGGTTAACATGGCCGTAACATTATAATGCGGTTTGGCTgctgaacacaaaataaagcaagCCAAACAAAGAAAGTAGATGAATAAAATCAATCGGATCAAAgcaattcattacatttattaacagCCATGCCTTTAGGAGTCAGGACAAACTAGCATGGCACCGACTCCAGGTTCGAGTCAAGGTCTGCCTCGCCTGCGCTGGGCTGAACAGTTTGTTCCGCAGTAAATGCCAGAGCCAGCGCTTTGCAGGGTCAGTTGAAAGTGTCAACAAGTGAATGGGCTGCGAGAATAACAAGCGCAGGGCAGGCAGGGCCTCACAAGGCCGGCTGGCTCATGTTCCCTACTGCTCTGGGGGTGCCTGAGGTCAGTCAGCATGGAAGAATCAGagctgcagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtccgtctgtctgtctgtgtgcatgtgtccaTGGGCACATATGCATTTACCAGAGGCCTGTGATCAATTTGAGTGTGTATTTtaactgtacatacattttgtcACTGAATTTCTCATTAtgtttcccccccacacacattgtCAGAAGACATTTTGGAAAGGAAGATCAATTtatcacagatgtgcaagtccACAACTGTTATCTGAAACTCCGCAATAAAAGCTATACAGACTGTATACAAATGCCTGTTCAGTGcgaatatatacagctctggaaaaaattaagggactactgcaattttttcttaaatcagcatctctacatgtatggcagcctttacattgatatttttatttggaatttgggagaaatgttgtcagtagttcatagaataaaacaaaaatgttcattttacccaaatacatacctataaatagtaaaaccagagatctgataattttgcagcggtctccattttttccagagctgtaaattgTCAgatataaacaacaataatgtttGTACTGAACGATACAGAACCGCCAATATAAACTCCTTTCAGTCCGGTGGGAGTGAGGGAGAATGACCTGCACAAGATCTTGACCAGCAAACTGTTAAGGTGTGGAGCAAAGCAGGCAAAGCAGCAGGGGCCCCCAACCCTGCTCCCTAACAGCCACAGCACAGCCGCTTCAGTGTCTACTTGGCCTCTCATGTACTCATCACTGTCCTGACAGAACCAGATCAAGCCTCGATCCATCCGCTCCCGAGAGAGTGGGCGATTTAAAACCCTGCCGGACCAAGACAACCCCTCCTGGACCGGGCCTCCCCCAAACCCTACCCTCCCCAGTGGTCAAAGCCTTTCAGCAAATCCTGGCTGTCATGCTATTATTCCACCATGTCAACCCCTCATTCAGTCAGGCCTCAAACAACAACAGGGGgacaaaaactacaaaaaaaaaaaaactgaaatgttgacAATGAATTGGAATGGGCTGGAAAATACTGGTTGAGCAGCAATGACAGCAACACACGCACTCCCCCTCTCCACGGCGGCGTCTGTGCTCAGCCTGAGCATTCAGGGGCGTAACAAGCTCGAGCTCTCATCTCGCAAGGCAGCTAAAAACACACCCCTGTCCAGAAGAGCAAGATCTCTTCCTTTAACAGCAGTGCAACTCCCCACAGACCTTTAAAACCTGCCCCGACACCAGAGCGCAGGGAAAAACACATAAGATAGAAAACAAAAGTTGCATACCTCTTTGGTGAGGTCATCATTGCCGTTGTTGTCAGGGAGTCTGTTGCCATCGTCCTCATCATCCTGGGGGGCCCCAGCACCCaagctctcctcctcctcctcgccaCCGTCGCCCTCACCGACAACACCCTCaccccctccacctccacctccacctccttctcctcctcctccatagCTGGACCCGGGGGAGCCCTCTCCCCTCATGACAGATCCCTCGGGGTTGCTGTCCATGTCGTCCAGCCCACTGCCATTGTCCAGGGCGATGCTGGGGCTGGACTGGCCGGCTGTGCCCACGCTGTCTGGGTCACGGTGAACCAGCCAGGCACTGAGCTCCGTGCTGGGCACCTGCAGCCGGTCCAGGGAGCGCACCTCGTTCAGCAGGCGGCGGGCGGTGAAGTAGTAATCGAGGTCCACGCTCTTGGGGTGGATGCCATAGCCATCCAGCGTGTTGCGCAGGTTGTGGAACTGCGTCTGCGTGTAGGCCGAGCTGGGACCCAGGATGATCTCCCGCAGCGGGGGCAGCTGGGAGGTCAGGTAGGTGTCCACATCCACCCGCACCCCAATCAGACTCAGCAGAATGGTGAACTGGATCAGGCCCTCTGTGAAGTATTTTTTCAAGTAAAGCAtttctttttggaaaataataataacgaaataataaaaaaattaaataaagtgaaaaaggggagggagatggggaatactaattaaaataacaaggaaaggaaaacatattttattttattaaagtcaGAGCGGGGTGGTGTGTGTGAAGTTGGGAGCGGTGTCCTTTTTATCCAAAGTGTGGACACCATACAGAGACCAAGAGGAGAGGTAAAGAGCTCTTTGGAAATATtgtctttcctctctctctggggcGGAGGGTGGAATgagggaaggggaaaaaaaaaaaaacagaattcccAAAATCCAAGTTAGTTTTGCTTTACAGTCCACAGTGGCTGGGAAAAACGTGGAGACACAGGAAGGGGCAGGTTTACAGGGCCCAGCGCTCTCCCCACACAAAGTCCCCTCCTCCCTGCCACCGAACTCCGAGCTGTCACACAGTCCAGGCCTGTTCTGTGCCAGAGGACTCCGGTGCCTTTGCTTGTGCCACACCTGTATAAACAAAGGGGTGGGTGGAGGGGGGGACAACAAGAAAAAATTGTGAATACAGGACTTACAGAGGCAGGACCAGTTACTTCCTACAAAGTGTAAATGGTAAACAAGTTCATCATTTATATAAGCATATCACCTGAGAATGAAAAATTTGCCATGTATAGTTTCTCCTGCCCAAAAGCTTTGcgattcaaaatatatatgtatatatacaggcATACAAG

Function

symbol description
nfe2l1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cellular response to oxidative stress; cholesterol metabolic process; and regulation of transcription, DNA-templated. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human NFE2L1 (nuclear factor, erythroid 2 like 1).
nfe2l1 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; identical protein binding activity; and protein heterodimerization activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of odontoblast differentiation. Located in cytosol and nucleoplasm. Is integral component of endoplasmic reticulum membrane.

NR:

description
PREDICTED: nuclear factor erythroid 2-related factor 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18569 True 3876 lncRNA 0.37 2 26979158 26983486

Neighbor

gene id symbol gene type direction distance location
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 4507 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 32594 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 77414 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 87226 26888334 ~ 26891932 (-)
AMCG00016652 NA coding downstream 92277 26872895 ~ 26886881 (-)
AMCG00016667 NA coding upstream 204350 27187836 ~ 27194901 (-)
AMCG00016664 hoxb2 coding upstream 227037 27210523 ~ 27212922 (-)
AMCG00016665 LOC105013251 coding upstream 233972 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 264074 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 302727 27286213 ~ 27286461 (-)
G14882 NA non-coding downstream 236820 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 456111 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 511059 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 553908 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 583733 26394932 ~ 26395425 (-)
G14999 NA non-coding upstream 260480 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 280227 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 312599 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 411633 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 429514 27413000 ~ 27413229 (-)
AMCG00016644 NA other downstream 335665 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 386858 26582526 ~ 26592300 (-)
G14843 NA other downstream 407517 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 458761 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 737768 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 11687 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 282401 27265887 ~ 27279334 (-)
G15026 NA other upstream 386104 27369590 ~ 27370139 (-)
G15067 NA other upstream 418190 27401676 ~ 27403922 (-)
G15076 NA other upstream 441407 27424893 ~ 27428651 (-)

Expression


Co-expression Network