G15016 (hoxb9)


Basic Information

Item Value
gene id G15016
gene name hoxb9
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27296085 ~ 27308958 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18659
CTTTACACAGTCCCTGCGCAACAGAGCGCCGAGCGGCTCCCGGGAGGGTCAGTGGCTCCGACCAGCCTGTAGCCCATGCACTGAGGAAACGCTGTGAACTGGACAATCCGGAATGGTCTGTCTcgatCTAACCCCTCTGCCAACTGGTTGCACGCCCGCTCCTCCAGGAAGAAGAGGTGCCCGTACACCAAATACCAAACCCTGGAGCTCGAGAAGGAGTTCCTCTTCAATATGTACCTCACCAGGGACCGGCGGCACGAAGTGGCCCGCCTGCTGAACTTGACTGAGAGACAAGTGAAAATCTGGTTCCAGAACCGCaggatgaaaatgaagaaaatgaacaagGAGCAGCCTAAGGATTAGAGGGACGGGACACAAGAACAAAATCAACAGCACGGATCGTCGCCGGTGTTTATTTGTGACAGTGGTGTTCTTTCGTTCAATCATAtcatttgttctttgtttcaCCCCTACCCCCTTTTTTGACATATAATCATGATCTCAGTATTAGGAATTGTTCGTCTGTTTTTCGTATTTTGATTGTTTCAGCATTCCTATTTGGATTGTGCCCCCAccccaataaaaataatttaaattaataataaaactaataataacgattaaaatcaaaacaatagcAATCGTATGGGTCTTGATATAATACATGTTTCTTAAATCGGTCTTTACTCGGCTTGTTGAATGTGTACGCCGTGTTGTTTTTCAGGAGCCAGGGGGGCTGTACCCGGAATTCACAGAGCCAGCGACCgtctatacaaataaattaacttttatttgAAAGAGTCTGTTACAAATAGCATTGCTTTCACAAGAATATCGTTTctgaaatgattaaattaaaatcaataatactTCTACCAGTGACGTAACCCTTtcctattattagtattgttactattattattaagttcATTCGCACAGACCTGAGTTATATTGTAATAGGCCCTCTGCAATCTGTgtcttttctcattttaaaaacctGCCTTATCGCATGAATTCCGAGGTCCAATGCTAACCTTTAtgtactgattttacagtaTAGGAAGAATACATTGCGATTATTTCCATCAATATAATTaagttagtttatttttaagtatttagcTTGATTTCGTGTTCTGTGTGACTGTAggcttatttaatttagtttgtcaACACCTTGGAAAAGagagttgttttttattattgctatttaattttttaaaatacactttattgTCAATGGGACCATAATCAAGCGCACGGCAGATATAGCGGGCAAATTTAcgattttcattttacatttaaagggTTGTGAATACAGTACAATGCAAATTAGTAATccgaatatttaaaaattaattctaACTCAACCCAACGCCTCTTTTTACGCAGAGAATGGGTCAACTGTGCACATTGTCATGGGAATATCATATCGTAGTTGCTTACTAATTTAGCGGCACCtgtagtgtatatttatttaaaattaattatgatCAAAAAGGATGGTAAGGCGAAATGGGAGGAGCAGTGTTTGcttagttgtttgttttaattaggcCTATTGAATGTGCTAGTGAAACAGGGCAAGGTTGGATATATCCGTAACTATTAtaaattttcctttttttaatacagaaaagacTCGTCGCGTTTTGTAAAGGAGTACAATGTTTACATTAAGAGTCATCATGAATGAGTATTTCTCATTGTCAATGTTTAAACGTATATAATTTCTGTATGTGTTATTTACAAACCGGAGAAACAAACCGTGTTCACCACTTCGAGAGATTCACATAGGAAAGCGACTGTAGGgtacttttgttttctaatttattgTAAATAGGCGAATAAGCTCAATCCTTTCTATTGCTATGCGTTTTATACTCTTTAGTTTTGGGGCCGGGGAGGAAAGTTATACTTGAATGAAAATTTAGAAATAAAGTGTCTCgttttacatattgtttacattttttttttttatatgaatgcTCTAGACTGGTGTCGTTTTGTtaccattaaaaatgcattatattgttCGTGTCCttttatatctataaatgtgttttctttgtttaataaacaaatccTGGAATGGTGCTCATGTACAGAGTATGAATCTTTACGCGTCCTAAGAGTTTGTCTTTTCCTTCGACTTTTATGTATAATGTCTGCAAAACATAGGACGCCATTATGTGTGTAAAGGCGCCTACACAACCTTTACTGCATCCTCGCCAAATTGCCCCTTGCCACGGCTTCCCCTGTTGTACGACTGTATGGTCCTGAGCTCAAACCAGGACCAGAGATCCCGGGATCACTTTTGTAGGAGAGGATTAAGTCGTGATGATTGAGATCCCTTAATTTCCCTTAGTCTACCAATGCTTACCAAGGAGGAGTCGAGTTATCTGTATTTCTAAGCTGCAATGACACTGTAAATGCTGGATTCGTAATAAACTGTTTACATCTAACACTC

Function

symbol description
hoxb9 Enables sequence-specific double-stranded DNA binding activity. Involved in cell chemotaxis. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18659 True 2470 lncRNA 0.38 2 27296085 27308958

Neighbor

gene id symbol gene type direction distance location
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 5224 27286874 ~ 27290861 (-)
AMCG00016674 NA coding downstream 9624 27286213 ~ 27286461 (-)
AMCG00016666 hoxb4,hoxb4ab coding downstream 48088 27247560 ~ 27247997 (-)
AMCG00016665 LOC105013251 coding downstream 76361 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 83163 27210523 ~ 27212922 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 29049 27338007 ~ 27339593 (-)
AMCG00016670 LOC106579309 coding upstream 62021 27370979 ~ 27375700 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding upstream 67007 27375965 ~ 27381088 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 121144 27430102 ~ 27433860 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 200687 27509645 ~ 27516973 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 30482 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 50838 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 312599 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 553747 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 773038 26522804 ~ 26523047 (-)
G15066 NA non-coding upstream 86161 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 104042 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 106695 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 107291 27416249 ~ 27416539 (-)
G15075 NA non-coding upstream 115596 27424554 ~ 27424821 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 16751 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 292378 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 652592 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 703785 26582526 ~ 26592300 (-)
G14843 NA other downstream 724444 26568669 ~ 26571641 (-)
G15026 NA other upstream 60632 27369590 ~ 27370139 (-)
G15067 NA other upstream 92718 27401676 ~ 27403922 (-)
G15076 NA other upstream 115935 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 821054 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1472514 28781472 ~ 28785507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding CI01000034 null 1694041 ~ 1698427 (-)