G15074


Basic Information

Item Value
gene id G15074
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27416249 ~ 27416539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18745
cacacacgcacgcacacacacacacagagggacagagagagagacacacacacacagggacagagggacGGACACACGGACATAGGCCCAGGGCCCTGGCTCAGCTCTTACCCCAGGATGCTGAGACAGACCTTGCCGTTGCGGTAGAAGTTGGGGTTGAAGCGCACCGTGTTGTTGCCTGTGGTGATGAGCTTCACCCGCGGGGGGTGGATGGGGTAGTCAGGGGGGCAGCGGAACAGGAAGAGAAAGAACCCCCCCTCGTAAGGTGTGTCGAAGGGACCGGTGATGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18745 True 291 lncRNA 0.60 1 27416249 27416539

Neighbor

gene id symbol gene type direction distance location
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 35161 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 40549 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 76656 27338007 ~ 27339593 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding downstream 103076 27299603 ~ 27313173 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 125388 27286874 ~ 27290861 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 13563 27430102 ~ 27433860 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 93106 27509645 ~ 27516973 (-)
AMCG00016692 NA coding upstream 227100 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 239209 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 284473 27701012 ~ 27707529 (-)
G15073 NA non-coding downstream 357 27415653 ~ 27415892 (-)
G15071 NA non-coding downstream 3020 27413000 ~ 27413229 (-)
G15066 NA non-coding downstream 17666 27395119 ~ 27398583 (-)
G15016 hoxb9 non-coding downstream 107291 27296085 ~ 27308958 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 150646 27263713 ~ 27265603 (-)
G15075 NA non-coding upstream 8015 27424554 ~ 27424821 (-)
G15079 NA non-coding upstream 118786 27535325 ~ 27541840 (-)
G15095 NA non-coding upstream 133773 27550312 ~ 27553162 (-)
G15165 NA non-coding upstream 378053 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 380244 27796783 ~ 27797008 (-)
G15067 NA other downstream 12327 27401676 ~ 27403922 (-)
G15026 NA other downstream 46110 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 136915 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 412542 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 772756 26626707 ~ 26643493 (-)
G15076 NA other upstream 8354 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 713473 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1364933 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1785333 29201872 ~ 29225587 (-)
G15706 NA other upstream 2784920 30201459 ~ 30202351 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01769963_01776287 UBE2Z coding CI01000034 null 1767975 ~ 1776720 (+)