G15206 (col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806)


Basic Information

Item Value
gene id G15206
gene name col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27979546 ~ 27988429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18900
ACCACTTAACATGCTTTATTTcagcattcaaaataattaaaaacatctcaaattattatacatatacaaaataggTACACATCCTCTTGTTTAACCCCCCGAAagtgtttttctgcttcttggagttcttttttctttaaatttttaatttttttcctattttcatatttttttaaacccttcgctggaaataaaaacaaacaaacagaagaaggGAGAAAAGTGGTGTGCTGCTGAAAGGAGCGAGATGACGACTAAAAAGGGGGAATTGGGGGGGGTGGGAAAAAAGAacaggggaaggaaaaaaacaaaaacaaaaatggaactaaaaaacaaatccacctGCTTAATTCACAGAAGACAGTCTACAGTAATCTCTCAGTTCCTGAAACTCAACTGTAGAGGTTTTGGTCTaacaccttaaaaaaataaaaacaattgtcacTCTCTGACAGGAAGACACTGTTTAATTAGTTTAGCACCAAAGATCCTGTAAgctttctgtgaaaataatatatatctgaaaaagaatatttttattatacactGCTTGCAGGACCTCATGAAGAAATAGCACCTTTTGCAGctgttatttgcatttaattattttgtttaatataatgattttttttgtagtgtAAAACCTGTCCTGGTGTTTACTCGACTCTAGGACACACGGATTGTTTCTGAGGTAGCCTTAAGATTTCATAATAAAGATGAACCCCTGTCCTGATGAGACTTTCTGAACAAtgctttcttttcctgttttttttttctccttgtggTTAGAACAACAAGACACTTCACTGTCgtttttcaaatttatttaaCACCTGAAAACGGTACATAGCATTTGGTTTTTCATTGTCCTTCTgcagtggtaaaaaaaaaaaacgtcaaaAAAAGTCACCTGTaatcaattacttatttttaaactccaggggattttacactttacaagtatatattattttcttgatGCCAGTGAaacaaaagatttttttttttttaaagtgtccTTGATGTAGGTGTCGGTAAAAGTAGTggtcccaaaaaaaaaaggttttcttttttttttaaagttgatAACACACAACCACCGTCTTCAGGAGTGTAGATTTAAGCAAGTGGACCGTTTGAGGCCGaatgagactttttttttaatgcatagaAAAGAGTTTAGAGAGATGAcggctagaaaaaaaaaaaacacaatttcaagtCCAGATTTCTTTTTTACAAGAAGCAGACTGGGCCAACTTCAAAGCCAAATTCCTGATCAGGTGCACCAACGTCCATAGGAGCGATGTCAATGATGGGCAGACGGGATGTTTTCGTTGTCTTGTAGTCGATGACTGTCTTGCCCCATGAGCCAGTGTGTCTCGTGCAGCCATCCTCGCTGACGCTGTAGGTGAAGCGGCTGTTGCCCTCGGCTCTGATCTCGATCTCGTTGGAGCCTTGCAGCAGCAGGGCCTTCTTCAGGTTGCCTGCCTCCTGGTCCATGTAAGCAATGCTGTTCTTGCAGTGGTATGTGATGTTCTGGGAGCTCTCGGTGGACATCAGACGCAGGAAGGTGAGCTGGATGTTGACATCATCGGCAAGTCCAGGGAAACCACGCTCGCCTCTCTGTCCTGGGAGACCCACAATACCACGCTGTCCAGCAATACCTTGAGGTCCGGGAATACCGGGGGCACC
>TU18901
ACCACTTAACATGCTTTATTTcagcattcaaaataattaaaaacatctcaaattattatacatatacaaaataggTACACATCCTCTTGTTTAACCCCCCGAAagtgtttttctgcttcttggagttcttttttctttaaatttttaatttttttcctattttcatatttttttaaacccttcgctggaaataaaaacaaacaaacagaagaaggGAGAAAAGTGGTGTGCTGCTGAAAGGAGCGAGATGACGACTAAAAAGGGGGAATTGGGGGGGGTGGGAAAAAAGAacaggggaaggaaaaaaacaaaaacaaaaatggaactaaaaaacaaatccacctGCTTAATTCACAGAAGACAGTCTACAGTAATCTCTCAGTTCCTGAAACTCAACTGTAGAGGTTTTGGTCTaacaccttaaaaaaataaaaacaattgtcacTCTCTGACAGGAAGACACTGTTTAATTAGTTTAGCACCAAAGATCCTGTAAgctttctgtgaaaataatatatatctgaaaaagaatatttttattatacactGCTTGCAGGACCTCATGAAGAAATAGCACCTTTTGCAGctgttatttgcatttaattattttgtttaatataatgattttttttgtagtgtAAAACCTGTCCTGGTGTTTACTCGACTCTAGGACACACGGATTGTTTCTGAGGTAGCCTTAAGATTTCATAATAAAGATGAACCCCTGTCCTGATGAGACTTTCTGAACAAtgctttcttttcctgttttttttttctccttgtggTTAGAACAACAAGACACTTCACTGTCgtttttcaaatttatttaaCACCTGAAAACGGTACATAGCATTTGGTTTTTCATTGTCCTTCTgcagtggtaaaaaaaaaaaacgtcaaaAAAAGTCACCTGTaatcaattacttatttttaaactccaggggattttacactttacaagtatatattattttcttgatGCCAGTGAaacaaaagatttttttttttttaaagtgtccTTGATGTAGGTGTCGGTAAAAGTAGTggtcccaaaaaaaaaaggttttcttttttttttaaagttgatAACACACAACCACCGTCTTCAGGAGTGTAGATTTAAGCAAGTGGACCGTTTGAGGCCGaatgagactttttttttaatgcatagaAAAGAGTTTAGAGAGATGAcggctagaaaaaaaaaaaacacaatttcaagtCCAGATTTCTTTTTTACAAGAAGCAGACTGGGCCAACTTCAAAGCCAAATTCCTGATCAGGTGCACCAACGTCCATAGGAGCGATGTCAATGATGGGCAGACGGGATGTTTTCGTTGTCTTGTAGTCGATGACTGTCTTGCCCCATGAGCCAGTGTGTCTCGTGCAGCCATCCTCGCTGACGCTGTAGGTGAAGCGGCTGTTGCCCTCGGCTCTGATCTCGATCTCGTTGGAGCCTTGCAGCAGCAGGGCCTTCTTCAGGTTGCCTGCCTCCTGGTCCATGTAAGCAATGCTGTTCTTGCAGTGGTATGTGATGTTCTGGGAGCTCTCGGTGGACATCAGACGCAGGAAGGTGAGCTGGATGTTGACATCATCGGCGTTGGAGCCCTCGCTACCATATTCGACTGGAATCCATCGCTCATTGCCTCGCCGAACCAGACGTGCTTCTTGTCCTTGGGGTTCTTGCTTGTGTACCAGTTCTTCTGGGGGATGCTAGCCTGGGTTGGGTAGACGCAGGTCTCGCCAGTCTCCATGTTGCAGTGGACCTTGATGGCATCAAGAGTGCATCCCTGGTTGGGGTCAATCCAGTACTCgcCGCTCTTCCATTCAGGGTGGCACATCTTCAGGTCCTTGCAGGTGCGGGCGGGGTTCTTCTTGGTGCCCTCAGGGCTGCGGATGTTCTCGATCTGCTGGCTCAGGGACTTGAGGGTGGTGTCAACCTCGAGGTCGCGGTCACGGGCAACATTGGCATCATCAGCTCTGTAGTGACGGAAGGGATCGGGGGCCTTCTCCTGAGCGGGCTGAGACACGAATCCGAAGTCGAATCCACCACCAGGGGGGCCTGGGGGTCCGGGGGGTCCGGGAGGTCCGGGGGGTCCAGCAGGTCCAGGGGCACCACCCTCACCCTAAAGACAgggcagggaggagagagatagagagagagagagagagagagagagaaggacaagTGAGGATGACTGCCATGACTGCCAAAACTAAGAATCTCTACCTTGCtgactttcatttatttttcctgatcCTGCTCTCCTTGGGCAGGGTGACTCACCTTATCTCCAGGGGCACCAGCAGGGCCGGGAGGACCAATGGGACCAGTCAAACCACGAACGCCATCTTTGCCAGGGGCACCATCAGCACCTTTGGGGCCACCATCACCCTG

Function

symbol description
col1a1 Enables identical protein binding activity; platelet-derived growth factor binding activity; and protease binding activity. Involved in several processes, including animal organ morphogenesis; collagen biosynthetic process; and collagen fibril organization. Acts upstream of or within skeletal system development. Located in extracellular space. Part of collagen type I trimer. Colocalizes with collagen-containing extracellular matrix. Implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Biomarker of several diseases, including alcoholic hepatitis; autoimmune disease (multiple); chronic obstructive pulmonary disease; end stage renal disease; and lupus nephritis.

NR:

description
PREDICTED: collagen alpha-1(I) chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18900 False 1695 lncRNA 0.39 3 27982888 27988429
TU18901 True 2398 lncRNA 0.45 6 27979546 27988429

Neighbor

gene id symbol gene type direction distance location
AMCG00016701 tmem101 coding downstream 136878 27840195 ~ 27842668 (-)
AMCG00016700 NA coding downstream 170434 27806349 ~ 27809112 (-)
AMCG00016695 NA coding downstream 241117 27732315 ~ 27738429 (-)
AMCG00016694 LOC105013104 coding downstream 272017 27701012 ~ 27707529 (-)
AMCG00016693 LOC107388104 coding downstream 310134 27655748 ~ 27669412 (-)
AMCG00016709 NA coding upstream 3218 27991647 ~ 27997674 (-)
AMCG00016713 NA coding upstream 103815 28092244 ~ 28107936 (-)
AMCG00016714 NA coding upstream 159398 28147827 ~ 28148678 (-)
AMCG00016719 NA coding upstream 207998 28196427 ~ 28209980 (-)
AMCG00016716 NA coding upstream 223415 28211844 ~ 28214306 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding downstream 12690 27964543 ~ 27966856 (-)
G15201 NA non-coding downstream 92986 27885086 ~ 27886560 (-)
G15200 NA non-coding downstream 95116 27883639 ~ 27884430 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding downstream 164082 27810638 ~ 27815464 (-)
G15172 NA non-coding downstream 174504 27802129 ~ 27805042 (-)
G15228 NA non-coding upstream 14810 28003239 ~ 28058063 (-)
G15254 NA non-coding upstream 172258 28160687 ~ 28160940 (-)
G15291 NA non-coding upstream 295933 28284362 ~ 28286445 (-)
G15330 NA non-coding upstream 462969 28451398 ~ 28451632 (-)
G15364 NA non-coding upstream 693409 28681838 ~ 28682338 (-)
G15076 NA other downstream 550895 27424893 ~ 27428651 (-)
G15067 NA other downstream 575624 27401676 ~ 27403922 (-)
G15026 NA other downstream 609407 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 700212 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 975839 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 141583 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 793043 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1213443 29201872 ~ 29225587 (-)
G15706 NA other upstream 2213030 30201459 ~ 30202351 (-)
G15787 NA other upstream 2537863 30526292 ~ 30529500 (-)

Expression


Co-expression Network