G15690


Basic Information

Item Value
gene id G15690
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30109453 ~ 30113284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19499
TGaggtttatgttttaattttattttggagCCCATTGAAGAGTGGGAATTCCAGGCCTCCTCAGTTAGTCAGACACAGGGCCTTCCTCCAGCAGGTCACGACCTCCCCTACCCGCAAGGGTCCAAACCGGCAGATTCCCCACTTCGAACGGATTCGTTATAGCATTtatgacattttcaaattaaaaacacttaatgtattattttattttactgacatGCAACATTAGCCTTGCATATACATTTTCCCCCCCCACACGAATAAAGAAATCATTCTTCAAAACCAGAGTCAAATCAAACCACACAAGCTTCTGAAGTGCATTCAGACTGATGATGCCCCTTCCACAGGAATGAAGTGTAGAGAACCAGATCCATTTAGCTTCACTTCGGTTATATTAAAAATAGGAACTAATAATTAGTGAAAGTTGAGAatctgaagtgaagtgaaagCACATGAGTCAGGAAGCCAATTTTCTATTTAACAGCACATTAGTATTTAACCAATTCTTATGGTCGGTTTTGCTTTTAGGAAACCTATCcacaatttcaatacatttttgaaagtttaatttcattcaGCATAAATTGTTGTGGAACCTCATGCAATTGTCCTGTAAATACCCAACAGTTActatatatagtgcctttcgTTCCAACGAACACAAGAAAATGGTCGGGCTGACTCACAGCAGCTTCTGCAGCACTCTGGAACCAGAACTCTCCCTGTTCAGATCATGAAGTGGGGCAGTGCAATGCAGTTTCCATAATCAGACAAGAGGCCAGGCTTGggctttatacatttattattgaaatatcgATGCAAGTTTAGAACCGAAGCTTCTGGAAGAACCATTTGTTCTTGCCGGTCTTGTATCTGCAGAAGAGATTTACAATTAATGCATTCTTCCCGAAATggtcaaaacaaaccaacaatgCAGTTCTGAACAACCCCATACACTTTTGCCCAAAACAAATTTGTTTattctaacaaaaataaaagggtaGAAAACAGACATGCAGTTAACAGCTTTCTATTGTATTAGACTATTTCCACTTATCATTGAAGACCAAATAGCAGCTCTGGTATAGAGTGGGCAGCGTTTCCCCATTTCTTACCTCTCCTCGAATTTGACCTTGGCTTCTCGTCTGGCTTTGCGCTTCAGAGCAGGGTCTCTGAACACATCCTTGTTGACGACGGTTTTGTCCAGAGGAATATCGACGGAGTACTGGTGGGCATGAGGTGGTTGTAGTTGTAGACCTTGACGAAGGCCTTGATCTTGGACCTCTTGGCGACCTTCTTCTTGCCCATGGTGGTGGTCACTTTGCGGGGGTAGCGGTCAATCCCGGAGACCAGCGCGTGGCTGTAGGGCCTGTCAGAGGTGCCGTCGTCAATATTCTGCAGGGAAAGACGGCAAAGACTGATCTCAGGAACCGGGTTTCAAGCAGAACAAGGACCCACAGGGCTGAACTGAAGCCCTCGGACTGTACCAGAGCAGAGCTATACTTAAAGAACAGATTTGCATGAAGGAAACTTACAGTAGACAGCAAAATTAAAGAGCAAATATTTTAGCAGACCGTAAAACTCGAGAGACCCTGAGATCATGACTGGATACACAATATCTAGTAGTAGGGATGATGCTTTTGAGGACACTTGGGGAGAAGTTGAAAAGGCAGACCCCCCCaattaatgtgcatttgaagCTTAGACTCACCTTGACGATGACAGCCTTGCGCCCAGCATAGCGCCCAGCCAAAACCATGACCACCTTCCCGGGTTTCATAAACTTGCCCATTCCTGTAAGCAAGGGAGCAAAACCCACAAGTCAATGGAGGCACCGCAAGACAGTACAGGCAAGGATCCGACATCACTCTTCATAATGAAATGATCCGTCCATTCACGCAAGGCAACCGACGTTATCAGCTTAACAGCAAGGTGTACAAAAAATAACTTGGCTAATTACATACTCTGTGAAAGCGTACTGCCGTTTTGAAATGACAAAATGAATGTGTAGTCAGCAAAGCAACTCCATCAAAAGCCAGCTGAAGCCACTTAATATAAGCAACACGTTAACGATGTATTGTCATACGTTAGTCAATAGCACACGTGTAGGAATTCCGTACATGCGCCATTAACAGGTATAACTAACATCGCAATCGGAAGTCACGTCCAACATTTACAACAGACGCAAAACAACTACGATACATCGCATTAGTATCGTGAACACAAAGAAGCAGATACCATTAAAACACGCATTTAGTATTTCAACACCGTAACGCCTCATTTACAACCCCGCCACAGTATATTAGTATCGCAATAAGGGTGAACAGGCCGGTCTGTATGCATGGGCACTACAAACACATGAAGACTCAAAGGGGTATCTTTACACGGTTAAAGCGTCATGACAAGAACGACCTTTAGAAAATGTGCGATCGGtacacaaataaaaggaaatacgAAGCTTAACGACTGCATACGCTGCCATATTTATAAGCAGGACTCGAGTCAGTGGACACCGGCGCTCCGGTTAATGTAGTGTATCTTTCGACCATCAACCGTAATCCAACAAATGCAACATCCTATTTAATCGTGTACGTGTGTATTAGTACCAGATACTGTTCAGATAATCGTATTTCGTTTGGTTATTAACGATGGAGAAGGATTATATCGTGAGAAACTCTACTCACTGCTGTTGCTCAATGGCCGCCGCTTTCAGTAAAGGAAGTGCAAAGGGTCTCGGCTGACCTTTCACACCAACTACAGATGACGCCACTTCCGCCTCCGCTGACACAAATCACACGGGTGCGATCAGATCGAGGCTGCGGCGGCAGGGTTCCTGTATTGTTGAGCTACTAGCAAATCATTACATTGACAGTAGGTTGTATGAGGAATCCCTTAGCCTAGAAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19499 True 2906 lncRNA 0.43 2 30109453 30113284

Neighbor

gene id symbol gene type direction distance location
AMCG00016774 NA coding downstream 9846 30088847 ~ 30099607 (-)
AMCG00016765 NA coding downstream 38229 30067321 ~ 30071224 (-)
AMCG00016768 NA coding downstream 73411 30019515 ~ 30036042 (-)
AMCG00016767 NA coding downstream 95518 30008137 ~ 30013935 (-)
AMCG00016766 arl4d,LOC107552768,LOC106579387,LOC107706901 coding downstream 112596 29993530 ~ 29996857 (-)
AMCG00016773 NA coding upstream 10567 30123851 ~ 30139691 (-)
AMCG00016775 NA coding upstream 48509 30161793 ~ 30174288 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 102960 30216244 ~ 30223409 (-)
AMCG00016780 NA coding upstream 123690 30236974 ~ 30241569 (-)
AMCG00016794 NA coding upstream 351873 30465157 ~ 30467804 (-)
G15675 NA non-coding downstream 64888 30042575 ~ 30044565 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding downstream 67578 30038790 ~ 30041875 (-)
G15585 NA non-coding downstream 302320 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 844786 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 1043065 29066111 ~ 29066388 (-)
G15708 NA non-coding upstream 91538 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 94403 30207687 ~ 30208537 (-)
G15716 NA non-coding upstream 120264 30233548 ~ 30236867 (-)
G15746 NA non-coding upstream 316645 30429929 ~ 30431998 (-)
G15845 NA non-coding upstream 885350 30998634 ~ 31002128 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 883866 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1323946 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1952253 28130012 ~ 28157200 (-)
G15076 NA other downstream 2680802 27424893 ~ 27428651 (-)
G15067 NA other downstream 2705531 27401676 ~ 27403922 (-)
G15706 NA other upstream 88175 30201459 ~ 30202351 (-)
G15787 NA other upstream 413008 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1267263 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2148265 32261549 ~ 32267968 (-)
G16247 NA other upstream 2309774 32423058 ~ 32423438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G157330 NA non-coding NC_053126.1 CM020923.1 22377944 ~ 22381452 (-)
mexican tetra (Astyanax mexicanus) G157246 NA non-coding NC_035914.1 CM008317.1 8947884 ~ 8948321 (-)