G16004


Basic Information

Item Value
gene id G16004
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31604606 ~ 31615213 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19880
GTGCAATGCAGGAGGTGAGAGGCAGCAGTGGGGAAATGCAGGAAAAGCCTTTGTGAGCTTGGGATTCTTTCACTGCAGCACTGAGAAGGCGATCACTTACCTCCATCCTGTCATCAGACACGGGCTCAATCCCGTAGGAGAAGACCCCATCTGAGAACATGCCACTGGGGAGAAAGAGGAGTGAGGGGCTGTCAGTTCAGTTTAGTACAGATTGGTTCATTCTACACAGGCAGCAGGAGAGACACAAGATGGGAACTGAGGAGCAGACGACTTAACCCCACCAGTCCTCTCAGTCCTGTGCTCATTACGGAGAGAGGGATGCTATGTTTTtagtacaataaataatgcagcaaCGCAAGAGCTCTCTGTGGTCCCCCGGGAAGACAGGGACTAAGAAGGGAAGTGAGCCGGTGAGGGAGTGGGGGTATAGAGAGCGCGTGGTGGAGGGGTGAGTGTGAGAGAGCAAGACTACGGACCCGGGCTGGTGGGGCATACATGATGGTACAGTGAAGCAGTTGGGAGGGGCTGTCTCCTGCTTTGTTGTATGGATAAACAGATCTTGTTCCTCTTCAATCTCCAATTATCCTCCCGATTGAAAAGCCTCAGCCCAGTGAACTGAGCTCACCGCAACAACCCACCAAAAAGCGATGAAGAGTACATGCAAGGGTCCTCCGAGACTAACACCTCCGAGATATCATCTGCTTTTTGTTCTGAAGGCTCAGAGCACAACCAGCTGAGTGAAATCATACGAGAGAGGACTCATGTGCAGGACACTGCTCTCAGCCAGCAATACAGGGGTCTATATTGCATAATCATAGTAACTACACACATAATGGCAATGGACCTAATGTATCAATCTATAATCAAATTCAATCAATCATTTCCAACCTATGATCTTTGAAAGCTAAGCTATGACCTCAGAACACACTACCAAATGAACACAACTCTCGGACAAGATTTTTGCCTTAATGCGACGAATGACAGTAACAAGCTTTGCAGATGTACTTACTGGTTTAACTCCAGGTCTAGGATGAAGAAGGTACCGAAGGCCTCCACCAGGAAGTTGGCTTGAGCGAGGTGAACAGGCtgcaagaaagagagagggcaGAGTGGTCACATAAAAACAACCTGGCTGGATTTttattccttttgttttctttagttgACCACTTTTTCAATCCAATTTGACTTCTCtcatgcatgtgtatgtgtactCAAAGTGTAGAGTACAGCACGCCCTCATGCCCAATCCCACACAACTGAGGAACTCTTTGAtgtaggaaaataattaaaaagggacACATGAGCACAGGCCTTTGTTCTCTTTGATATCAAGCATTGTTAATACTTACCAATTCAAGGATGTGGACCGTGACAATGAACAACGCCAGTCACTTGAATTTCTTAAATCATTCATACATAACAGTGACGGGATAGTTTGCTCCTGGAGGTCAGTATTTTTATATGCCTACCTCCTCGGACACAATACTTAACATGTTAAATTCATCAAATAAATGGTTCTATTAAGTAATTGGCAGTTGAGGCAGAACAAAGAGCAGAAATCCCTGTTGCCCACCAGTGGTCCAaaagaggtcaaaggtcacaacaGTGGGGCACATGACCTTTTTCAGTCTCTGCTACTTGCTCTTTAAGCTGTTTCTGCTGTAGGATTGCAGTGAGggacaaaaaaaagacagggTTGGCTGCTCTCCTTGTAAATGTGTACAAGCCTTTCTCCAGTTGTCCCTCCAGTTctgatttttctgttccaaTTCAGAGggacagacaaaacaaatactggATTAACAACTCCATCTCAGAGGGTGCTGTGTAGAATAGCAATTAGCTATTCTGAGCTGAGGCATTAATGGAGGGGTGAAAGGAAGaatgtacttaaataaataaataaaccaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU19880 True 1915 lncRNA 0.45 2 31604606 31615213

Neighbor

gene id symbol gene type direction distance location
AMCG00016816 NA coding downstream 200662 31400817 ~ 31403944 (-)
AMCG00016811 NA coding downstream 267326 31336445 ~ 31337280 (-)
AMCG00016812 NA coding downstream 289218 31292282 ~ 31315388 (-)
AMCG00016807 becn1,LOC102786760 coding downstream 421305 31177556 ~ 31183301 (-)
AMCG00016802 LOC105013322 coding downstream 543920 31060351 ~ 31060686 (-)
AMCG00016823 nmt1,LOC102778525 coding upstream 28643 31643856 ~ 31653933 (-)
AMCG00016824 NA coding upstream 43035 31658248 ~ 31674496 (-)
AMCG00016831 NA coding upstream 140322 31755535 ~ 31762700 (-)
AMCG00016833 NA coding upstream 162199 31777412 ~ 31801252 (-)
AMCG00016835 NA coding upstream 187824 31803037 ~ 31818127 (-)
G15985 NA non-coding downstream 75985 31528050 ~ 31528621 (-)
G15982 NA non-coding downstream 100058 31504079 ~ 31504548 (-)
G15976 NA non-coding downstream 114770 31489261 ~ 31489836 (-)
G15962 NA non-coding downstream 123205 31476843 ~ 31481401 (-)
G15947 phb,LOC107661032 non-coding downstream 182638 31420744 ~ 31421968 (-)
G16024 NA non-coding upstream 78603 31693816 ~ 31697608 (-)
G16026 NA non-coding upstream 83923 31699136 ~ 31699400 (-)
G16043 NA non-coding upstream 103687 31718900 ~ 31720036 (-)
G16069 NA non-coding upstream 154517 31769730 ~ 31771274 (-)
G16154 NA non-coding upstream 590510 32205723 ~ 32206877 (-)
AMCG00016815 NA other downstream 216338 31380547 ~ 31388268 (-)
G15787 NA other downstream 1075106 30526292 ~ 30529500 (-)
G15706 NA other downstream 1402255 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2379019 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2819099 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 646336 32261549 ~ 32267968 (-)
G16247 NA other upstream 807845 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 882294 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1560863 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1776576 33391789 ~ 33434651 (-)

Expression


Co-expression Network