G16542


Basic Information

Item Value
gene id G16542
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33993182 ~ 33995382 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20546
TTCTGcttggttttgctttgtttgtttttaatgttttattgtttattgtttgttggtaagaatttgaataataaattcacatttacattatacagtGTACATTATTAGTAAGTACAGAGAACATTCAGCTTTGAACAACACTTCTTCCAGGAACCCTGATTCAGAATCCAGCTCTCCAGCCCCAGCACCTCTGTAAGCTCCTCCAGGCGTTCTGCATCTAGCAGCGAGGTGTCTTCACTTCTCTGCAGGACACAATACTTCCCTACACATCTCCAGGCACCGAGCATAAGACCATATGTCATGAATCCGATGGCACTCCCTGACACTTAAACATGTCCGGCAACAATACTGAAGATCAGTGAAAATCCTAAACTCCTAACCCTCTTAAAATATCAGTATCAGTAGGCATATAAATCTCCTAATACATTCTGACTTCAGTACCTCTTAAGTGTAGTAGTGTCAGTAGTTTGACTGTTTCGAGATGTGATGGGATGATCTACTGAAAATCTCATACTGGCCTTCTCATACCAAAGGAACTGTCATCTTCTGGCCTCACCGCCCAATGAAACACAGACCCCTGTTTTGATTCACCTTGTGTGTTACAAATAAAGCTAATGGCACCCCTGTGACTGCAATTCAAGAAAAGGCTATTGGACTCCAACATCACATTCATCAGTGGAGAACCCTGACCCttccacaagaaaaaaaaaaaaaaactaatcacCATctaaatatcttaaaaaaaaaaaaaaagagtagaATCGGTAACAATTTGACAATACCTTCCGTTCTGCAAATCTCTCCATAAATTGGTAACTCACTTATTGCACTATTTGCTCTTTATGTATCTGATGTAAGTTTCATAACTCTGCAAATTTCAAATGGGGCCTATGGGCAAGTCAAATTTACATAAGTCACGTGTTATGTAACCCAGGGAGTGCctgtacatttaatgttttggtgAAAGGACTAAATCTGGGGAGAAATCAGTTCAGTCATTAGTCAGAGCATTGCAGAATATGCAAAGCAAAACAGCAGATCAACAACTGTCAACTGGAACTGATGCACTGAAGACCTTTACAAACCCTGAGGGGTAGAAATTGAGTATGGGAAGCACAGTAAGTCTACAGGCtactttttatacaaaataagaaaagctcAACTAAATTCGACTCGACTGTATTGATTCTTAAGGGATTCTAGTTGGTCTACAAGACAAACCTGTGTGGCATTCTGGAACTTAAAGACACACTCCATTCTTTTGGATTGAATTATTTTGGTCCTGTCTTTGTCATCTTAAGATGAATGAGTTTTGTCACCAAAGCTTTTCATAGTAACATGGTAGTCTGGCCAGAAATTATGCTCTTGCTGTATGTGTCCTTAAGAAGTCCTTGTGAAAAAGAAGATCTGGAATGTTTTCAAGATTCACTGAATGGCATTAAACCACAGCAAAGCCACAATTGAAATACCTGTATTGGGACAACAtaaaccatttccatttctctAATGTGGTTTTCAATCTAAAAATCACTGTAAGATCTCAATTCACGACCCACAAGATTCCCATAGGAAAAAATCTTAGCACAGTTTTATACAAAAGAAAGCACATTAGGAATTAACAAAAGTTCCAGAATTTCATTAAAACTGAAGACAGAACTTATTCAAGGCTTTCCTGCAGAGTTCTACCAATTGCAACTTTGGCTGTTTAAGCATATGAAGATagatacttttttgttttactttgagaTGAATTCCGCCATGGTAAAGTacacaactgaaaaacataacTAGATCATCCAATGAGCTGTTTGACAACAATGATCAGGTCCAATCAGGAATATGCTAGTCAGTCAGTGAAACGCAGAAGCTCTGTCAGGTGCTGGGGCATGGTGGTGTCTGTGTTCATGATTGGCTCCTGAGAATGGGGAGTTAGTTCAGTATGGCCACTGCACATTAACAGGGCACCAATGCAGGCCTGTGCAGAGGCTACAATCTGCAATtgttaacagaaaaacaataatacaaaataaaaaaacataaaaaaagagacCTGATACAAACCCAGGCACTTGTGATACAGTATGAATTTTGGAATACATATTTACACTTATAAGTGctacaaaaacattattgtagTATTACAGataaatcaacaaaacacaaaataattgttaaaaaaaaaaataataataatctttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20546 True 2201 lncRNA 0.37 1 33993182 33995382

Neighbor

gene id symbol gene type direction distance location
AMCG00016905 spop coding upstream 191372 33791287 ~ 33801810 (+)
AMCG00016906 spop,LOC107754841 coding upstream 219649 33761418 ~ 33773533 (+)
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding upstream 330875 33652917 ~ 33662307 (+)
AMCG00016902 NA coding upstream 364893 33625976 ~ 33628289 (+)
AMCG00016896 NA coding upstream 368647 33619292 ~ 33624535 (+)
AMCG00016910 NA coding downstream 174106 34169488 ~ 34191749 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding downstream 273616 34268998 ~ 34271418 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding downstream 298831 34294213 ~ 34296833 (+)
AMCG00016912 stat3,LOC107653351 coding downstream 315486 34310868 ~ 34340346 (+)
AMCG00016916 NA coding downstream 364845 34360227 ~ 34435938 (+)
G16512 NA non-coding upstream 341893 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 664840 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 812743 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 813242 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 1010852 32981779 ~ 32982330 (+)
G16552 NA non-coding downstream 109074 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 602440 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 740955 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 780443 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 825815 34821197 ~ 34821413 (+)
AMCG00016901 NA other upstream 318821 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 343102 33630012 ~ 33650080 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 659436 33320144 ~ 33333746 (+)
G16289 NA other upstream 1135742 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 1489810 32499056 ~ 32503372 (+)
G16546 NA other downstream 51989 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 97894 34093276 ~ 34099596 (+)
G16550 NA other downstream 104933 34100315 ~ 34100863 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 1163215 35158597 ~ 35204232 (+)
G17193 NA other downstream 4500669 38496051 ~ 38503632 (+)

Expression


Co-expression Network