G16654


Basic Information

Item Value
gene id G16654
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34649953 ~ 34650174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20684
gcagaattaaaaacaaacaaatcacttgggccagatggtatatttccaacagtacttaaagaaatgagggaaatgatttataggccgctaactcaaatattccaaatgacacttagaacaggggatgtgccaactgactggaagacagcaaatgtcataccaatccacaagaaaggggacaaaactgagccaggaaattatagaccaatcagtctcacctgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20684 True 222 lncRNA 0.40 1 34649953 34650174

Neighbor

gene id symbol gene type direction distance location
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding downstream 386943 34214899 ~ 34263010 (-)
AMCG00016908 NA coding downstream 641153 34000597 ~ 34008800 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding downstream 769275 33877103 ~ 33880678 (-)
AMCG00016904 LOC107583088 coding downstream 1053711 33582724 ~ 33596242 (-)
AMCG00016892 ddx42 coding downstream 1074657 33554101 ~ 33575296 (-)
AMCG00016931 NA coding upstream 441279 35091453 ~ 35096502 (-)
AMCG00016936 NA coding upstream 585418 35235592 ~ 35245651 (-)
AMCG00016937 NA coding upstream 623749 35273923 ~ 35312713 (-)
AMCG00016940 lasp1,LOC102776212 coding upstream 754456 35404630 ~ 35410252 (-)
AMCG00016939 NA coding upstream 761405 35411579 ~ 35420041 (-)
G16653 NA non-coding downstream 50022 34597198 ~ 34599931 (-)
G16650 LOC106601024,LOC106607294,LOC103359488 non-coding downstream 88885 34558579 ~ 34561068 (-)
G16635 NA non-coding downstream 176406 34472336 ~ 34473547 (-)
G16605 ptrfb,LOC105935706,LOC101465061,LOC102209316,LOC102787483,LOC103482185,LOC103142478 non-coding downstream 349150 34296259 ~ 34300803 (-)
G16567 NA non-coding downstream 455643 34191472 ~ 34194310 (-)
G16669 NA non-coding upstream 86165 34736339 ~ 34736549 (-)
G16679 NA non-coding upstream 103997 34754171 ~ 34757005 (-)
G16693 NA non-coding upstream 125651 34775825 ~ 34777048 (-)
G16712 NA non-coding upstream 465938 35116112 ~ 35118906 (-)
G16761 NA non-coding upstream 565929 35216103 ~ 35222538 (-)
G16563 NA other downstream 542012 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 1136374 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 1215302 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 1471070 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 2142634 32497507 ~ 32507319 (-)
AMCG00016938 NA other upstream 745818 35395992 ~ 35399030 (-)
G17032 NA other upstream 3107983 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 3225076 37875250 ~ 38058939 (-)
G17421 NA other upstream 6566477 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 7286752 41936926 ~ 41938563 (-)

Expression


Co-expression Network