G16705 (nkiras2,kbrs2,LOC106607286)


Basic Information

Item Value
gene id G16705
gene name nkiras2,kbrs2,LOC106607286
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35091459 ~ 35094092 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20745
TGAAGAAACccattttaatctgtaaaacaCGTTTATACATCTTCCCACATGTCATTGTTtgtgaaaagttattttttgaAAGGAGCAAAACAATGAGAACTTTCAGTGATTTTAAGACACAagatacacaaaaaacaatatagtttACAATATTGTAGTGGTCCCCCAcgctaataaaatatataaacacggCACAGATGAGGACATGTATCCAGTGTTGTTGAAAATAGGAAAATCAGTATAATTACAGAGCAGGATCAGTATACAATACAGCAAGAACAATATAACTCCACCAAAGGTAAGAAAGCAGAATATCTGGGTTGGCACACATTGCTTCTTATTCAGGATACGTAACATACTGGTCACTTAATTTGGCACTAGCAAATAATGTTCATAATAAATTGATATATAGCTAATTTGATCTTGAAATGTTTCTGTTGGGAATTTGGGAATTCTCAATTaggaaaaatgtattagaatatGTTGTCCCCTTTACACCCTCATGCACCTATACAATGTACTTACAACATTAGGCTTTGCATGTACTGTAAGCCCAGAGGCACTGGAGAATTAAGAGGGTGTACACATCCAGCTGTTACCCAAGGTATTCACTCTCTTAATCTCAAACAATTTTATCCAGTGATTGTCAGTCTGATGTAAACTTTGGACTGCTACACAGACATttttggaatgaaaaaaaacgtaAAACGATATCATCATTGTTGTTACATAAGTCTAGCTTGATGAACACGAGTTATTAAACTACATGAATCActaaacaacattgttttttacaTGAAGGGTGTGATATTTTTGTCTATGCAATACTTAATGCTGGGAACGTGTACTACAGTTTGAGAACACAAGAAGTCAATTATACAGTTTCAATGCATATACACCTTTATGCACACAGTCTCTCAATAGAAGCTCCATCCCAATTAGGCCACATTAGAGAAGTACAGAGGAAGGAGGTACACTAGAGTGGTTCATGTTGACGGGCATATctagacattttgttttgcagtttcaTTTGCTTTAGCCATTTGAAGTCTGCTTTCTTCATCAATTTCAGGCATCTTCACAAACAAGTTATACAGAAAGCTATGTTTATACTGTACAATTACTGTAAAAAGGACAACAAATCTATACTTCTAGtaatgtagtagtaataaatatggTTTAAGCATATTTGTCCTGAATGGAAACTAAGTTTTAAAGCTTTATTAAGGGAAGttttctctcttcatctctGAGGATAATACTGTGTAACAAAAATAGCAATGGGgagaaaaaatgacaaatttaaattggaaattgAGAGGACAAAGGAATGGTTATTAACCACAGTAAAAAGCAACACCAAACCTAAAAGAAAGGCTGCTTCATGGCTTAAGAGTGCTTGCACTATTAATCTGTTCTGCACATGCCCACACTGAAATGCTAAAAGGACTTTTAATATTAAGCAGACAATTTGGGATAAGAAGCAACTGCTTCACGCAATAATGAATCACAAACATTTCACATCTTCAAAGTACTTAGTAAAACCAGTGTAACAGTTCCCCATACATAAATAGTCTGAAAAGCATGCATACTTAagtaatttacaacatttttgagtgcatttgtgtaattttgaaatgcTCAACAACAATTGGCACTCATCAGCAGTGTGTCAGCTGGAGTCCCAGTGCCTTAGGCCATGTTCTGCACAACTCTGGAGCTGGAATGTACAGTAAGGAGCGCCCGAGCCCAACCCTGAGGTTCACCTATAAGAGATCTggcaagaaaaaacacactgaggtaaaaaataaactaaaactaagCCACCTCAGAAATGCATACCCTGTCggctttaaatatttcagtcctTATTCAGTCAGTGTAGTTATCTGCATTTCAGTTGAAATAACTGATAATTGCTAGATTTATGACCTGATATGGctaattagaaaatgttttagCTCTTGACAGCCTAGTTTCAAGTGTTGtcactgtgtatttgtttgtctgtaacAAGACTTTAGCCCCACAACCAAACCCAAACCCAATTCTgatcaaacataaataaaagttgtttttgGGGTTATTCTTCCAGTTTAGATCTCGATTCTGAGCTATATTTTGAGTCTAATCTCTTTCACTTGAAGTCTGTGTGTATGGATGTAcataatcattatatatatatatgtatgtatacatacatgtatacatacacacacacacacactgccccctgtgttttgtgtgttgcagTTCTAGAGGTCTGCACTGTTCAGATCCAGGTGACCCCCAGAATGTCCTGAGTGTGGCTCTCTGGGGCTCCTGCACAGACTCATCTCCTCCCTCAGCCGTCCAGGGAGCCGCTGCCCTTGTTCTTGTTGCGGCTGAGTGGGAAGGAGGACTTGCTCTGCGGCTGGGTCATCTTGCTGGCCAGGAAGACAAAGGGCTCAATGAGTGTCCGGCGGTCCGCCACTGACACCTCCCACAGCCGCACCTTCTCCGTCTTGGCCCAGTGCTGTGCCGCATCGGCGTCCACCCTGCGCTGGTCCTGCAGGTCGCACTTGTTCCCAAGCACCACGATGGTCACCTGAAGAACAGAtgccacaa

Function

symbol description
nkiras2 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm. Orthologous to human NKIRAS2 (NFKB inhibitor interacting Ras like 2).

NR:

description
PREDICTED: NF-kappa-B inhibitor-interacting Ras-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20745 True 2607 lncRNA 0.39 2 35091459 35094092

Neighbor

gene id symbol gene type direction distance location
AMCG00016927 NA coding upstream 10211 35033815 ~ 35081248 (+)
AMCG00016926 NA coding upstream 76793 35010365 ~ 35014666 (+)
AMCG00016925 NA coding upstream 164128 34924190 ~ 34927331 (+)
AMCG00016923 NA coding upstream 317820 34761492 ~ 34773639 (+)
AMCG00016922 kat2a coding upstream 334458 34727405 ~ 34757001 (+)
AMCG00016928 dnajc7,LOC106607285 coding downstream 3498 35097590 ~ 35116668 (+)
AMCG00016930 NA coding downstream 27855 35121947 ~ 35131005 (+)
AMCG00016929 NA coding downstream 43457 35137549 ~ 35141789 (+)
AMCG00016932 klhl11,LOC107097235,LOC103373141 coding downstream 111788 35205880 ~ 35212613 (+)
AMCG00016933 NA coding downstream 126470 35220562 ~ 35232529 (+)
G16698 NA non-coding upstream 270046 34821197 ~ 34821413 (+)
G16692 NA non-coding upstream 314412 34775825 ~ 34777047 (+)
G16668 NA non-coding upstream 354910 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 491542 34597822 ~ 34599917 (+)
G16552 NA non-coding upstream 985772 34104456 ~ 34105687 (+)
G16728 NA non-coding downstream 90243 35184335 ~ 35234875 (+)
G16731 NA non-coding downstream 146687 35240779 ~ 35241527 (+)
G16771 NA non-coding downstream 168960 35263052 ~ 35265068 (+)
G16775 NA non-coding downstream 176541 35270633 ~ 35275819 (+)
G16778 NA non-coding downstream 184737 35278829 ~ 35279068 (+)
G16550 NA other upstream 990596 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 991863 34093276 ~ 34099596 (+)
G16546 NA other upstream 1043739 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1417098 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1441379 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 64505 35158597 ~ 35204232 (+)
G17193 NA other downstream 3401959 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4144981 39239073 ~ 39254490 (+)
G17697 NA other downstream 7297205 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9032122 44126214 ~ 44137931 (+)

Expression


Co-expression Network