G16771


Basic Information

Item Value
gene id G16771
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35263052 ~ 35265068 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20830
tcttcttttttaaataattccatTTATTTCCAACATATATATAACTTGTTTTAGGggttgcattgttttaaagcacTGAACCATGTAAATATTAAAGGGGCTTGTGTCATGCAGGCTGGCTTAGCACTGTTAGGCCATGTCATATTAGCaacatttcttttaaacaattaatattttcatttatatatgttaCACATTTGAagacaatatttacaaaaaaaaaaggaaaaaaaaatctttacagcaaatatttgcatacatttaaaaatgctgatACATACATGCAGAAAACACATATGTATCCGTTTTTCTATGTCTTTtccatgttttgtgtttgacaGTTTTGTCCAAGGCCTCTAAGGAATGGATGgaattttgtttcatttatgtTCTGGAAGATTGACAGTCTGCCTTGAAACTGCAAATCAAATCCTTACGGAATGAAACAGTACcaatgctttcattttgtttcgGTTTGTTGACCAGCGTCAAGGAGTTTCCTGCCAACAGCAGCACAACAGGCAGTCGTTCATTTCAAAaacatagttaaaaaaaaaacaacgctTGTTCTATAGCAGCAAtaagtctgtttttcttttcatacagGAATAGGGAAACTGCATAGTTGGTTTCGTCGGAGTGTGCTTTTGTCAGCTTTCAGAGGTAAGTATTATTTTGTTACCTTGGTAGTTTTccgaaagaaagaagaagaagaagaatacaaaatactaataataacaagaataatgatgatgatgataataataatgttagatGTTTAGTAAATGTCATTGTTACGTTATTAATTTGGTATTTCCTGTGGGAAAGTGGAGCACTCTGCTTGTGACACTGTGACTAATGCGCTTCAGAATTGAGGCACTTGCAGGACTTTTttggggaaacaataataaaaaaacacagcaaaggggaacagtgggaaccttagataaaaaaataatcataaaatataataaaaccaaagCATTCATTTGCCCTTCCTGGTCTGCCTGTGGTATCAATGACAGCCTGATTTTTACCCTGGCGAGTGAAGGGGCAGTTTGAAGTCTGTTGTTTTGCTCcatcaataataatcagcaGCTGGACCACTCAAGACCCCGTTTCAGTCTGATCTCTCAGTCCTAACACAGGGCCAGCAGCTCCAGCCCAATAGGGTTGcatgtgtttcttcttttttcatccCATCTTAATTCCTTAATGGAACTAATTAAGCGAACAATAGTCATATCAGCTGCCTCTTCCAGCCCAGACTCATCTGCCAATTCAAAGGCACCTCAGAAAGCTGCAGGAATCCAGCACTCGCAGCATGGAGTTGTCAACCCCTGCTCTATTACTCAATCAATAATATACAGTGTGTAGTTCAGGGGAGTCTGCAGTGCAAGGCTGACTACTCTGTTCAGCTCCACAACTGCAGTTAGATCCATAGTCAAATAAACCAAACTCCTGCTCTTGAATGAACGCGAAAGGCTCAGCCAGTTCTGTATTTGACCACACCAGACGTATGGAACGACAGCTGAGCAATATGTCTTTGAGTCTGCACATTCAGCTTGTGGGGTCACTGGCTGTGTTCCAGTCTGtttcttattattgtttcagCCAAGGCAAAAGAGAGGAGTCCTCTGGTCTGTGATGGCTGTGATGTTTGGGAAGCGCTAAAACGGTGTGGGGAGGCCGAGCTGGAGAACAGCACACTCTACTCTTGGGTTGGAAAATGGAAACTTACACAAAGCATCTTTTGCTCGTATTcgtagattttttttattcggCTTCTTTAACCTGTACCTCCAGCTGTGGTCCTGAGTCAATAATCTCTAAAGACAAtttttattgatcaattaagcaagacATTTCAATTGAGAGAAATGTGGTTCTTAAGGAATGAAGGATGAACTGATGGCCTTTAGATTTAGCCTATAAAATCTGCTGAAACAGGGCTTTCCAGGACTAGGGTTAGAGATCCCTGCTTTAAACCAATTGGGataccatgaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU20830 True 2017 lncRNA 0.39 1 35263052 35265068

Neighbor

gene id symbol gene type direction distance location
AMCG00016935 NA coding upstream 2572 35247507 ~ 35260480 (+)
AMCG00016933 NA coding upstream 30523 35220562 ~ 35232529 (+)
AMCG00016932 klhl11,LOC107097235,LOC103373141 coding upstream 50439 35205880 ~ 35212613 (+)
AMCG00016929 NA coding upstream 121263 35137549 ~ 35141789 (+)
AMCG00016930 NA coding upstream 132047 35121947 ~ 35131005 (+)
AMCG00016941 NA coding downstream 288154 35553222 ~ 35555196 (+)
AMCG00016943 NA coding downstream 358282 35623350 ~ 35623650 (+)
AMCG00016945 mtmr14 coding downstream 510008 35775076 ~ 35785159 (+)
AMCG00016946 NA coding downstream 538080 35803148 ~ 35848748 (+)
AMCG00016948 NA coding downstream 837298 36102366 ~ 36202202 (+)
G16731 NA non-coding upstream 21525 35240779 ~ 35241527 (+)
G16728 NA non-coding upstream 28177 35184335 ~ 35234875 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding upstream 168960 35091459 ~ 35094092 (+)
G16698 NA non-coding upstream 441639 34821197 ~ 34821413 (+)
G16692 NA non-coding upstream 486005 34775825 ~ 34777047 (+)
G16775 NA non-coding downstream 5565 35270633 ~ 35275819 (+)
G16778 NA non-coding downstream 13761 35278829 ~ 35279068 (+)
G16779 arhgap23,LOC103363845 non-coding downstream 17103 35282171 ~ 35282760 (+)
G16784 NA non-coding downstream 41421 35306489 ~ 35306725 (+)
G16788 NA non-coding downstream 86509 35351577 ~ 35351920 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 58820 35158597 ~ 35204232 (+)
G16550 NA other upstream 1162189 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 1163456 34093276 ~ 34099596 (+)
G16546 NA other upstream 1215332 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1588691 33668593 ~ 33674361 (+)
G17193 NA other downstream 3230983 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 3974005 39239073 ~ 39254490 (+)
G17697 NA other downstream 7126229 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 8861146 44126214 ~ 44137931 (+)
G18192 NA other downstream 9389584 44654652 ~ 44656098 (+)

Expression


Co-expression Network