G16984


Basic Information

Item Value
gene id G16984
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36973064 ~ 36973283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21063
catgcttcttgcgttactaatacttgtattattgattgttttcctccttgctccctttcccgtagcccttgactgtgaccctacatcttgacagcacttagcttttactttccaggatgtatgacctcacttactgtacttacctgtgtaaattggaagttgtaaaatgtattatattttgaattgctctgtttaatgtaaatttgaatttgtaatgttt

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21063 True 220 lncRNA 0.35 1 36973064 36973283

Neighbor

gene id symbol gene type direction distance location
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 413083 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 448433 36501049 ~ 36524631 (+)
AMCG00016949 NA coding upstream 671171 36299372 ~ 36301893 (+)
AMCG00016947 NA coding upstream 720849 36241389 ~ 36252215 (+)
AMCG00016948 NA coding upstream 770862 36102366 ~ 36202202 (+)
AMCG00016960 NA coding downstream 1112007 38085290 ~ 38087536 (+)
AMCG00016966 NA coding downstream 1348682 38321965 ~ 38336646 (+)
AMCG00016965 NA coding downstream 1364362 38337645 ~ 38351463 (+)
AMCG00016970 NA coding downstream 1422416 38395699 ~ 38399287 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 1427447 38400730 ~ 38415204 (+)
G16969 NA non-coding upstream 291512 36681339 ~ 36681552 (+)
G16863 NA non-coding upstream 1074548 35898207 ~ 35898516 (+)
G16814 NA non-coding upstream 1523893 35399828 ~ 35449171 (+)
G16806 NA non-coding upstream 1591281 35381497 ~ 35381783 (+)
G16788 NA non-coding upstream 1621144 35351577 ~ 35351920 (+)
G16990 NA non-coding downstream 274145 37247428 ~ 37303443 (+)
G16998 NA non-coding downstream 440831 37414114 ~ 37418704 (+)
G16999 NA non-coding downstream 451204 37424487 ~ 37424697 (+)
G17000 NA non-coding downstream 452383 37425666 ~ 37425871 (+)
G17001 NA non-coding downstream 453264 37426547 ~ 37426788 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 1768832 35158597 ~ 35204232 (+)
G16550 NA other upstream 2872201 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 2873468 34093276 ~ 34099596 (+)
G16546 NA other upstream 2925344 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 3298703 33668593 ~ 33674361 (+)
G17193 NA other downstream 1522768 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 2265790 39239073 ~ 39254490 (+)
G17697 NA other downstream 5418014 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 7152931 44126214 ~ 44137931 (+)
G18192 NA other downstream 7681369 44654652 ~ 44656098 (+)

Expression


Co-expression Network