G17021


Basic Information

Item Value
gene id G17021
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37414114 ~ 37414810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21108
cctccttTAACTTTTGCCACTTTGTGTATAAGATAGAGACTTAATTGTACAACTCATTTCATTGAATGGTacgaaaatatttttaattcagcaaggaaaaatgtttttttgacaCCTCTGACAGAAAGGCTGGAAAGAAAGGACAATACTGTTGGATTAACTTGTGGTATCACTCAGCATTTGCTTTGCACACAGTGCCTTCTCAGCTACAGTACATTTCTGGTTTTTCACCCTACACAACATTTTCTCTCATTATCCTGCCTTTTGAGAACTGCTTGCTGTCGAGTAGTGTTCCTTAATCTACCCATTATagcaactaaaaaataaaaagttttcaGACCCGTTTATATCGAAGAGATTTGGTTTCACGTCATTCCATATCACAAGAGCTTTTCCAAAAGTACTCTGTAACAGTGTGgctcctttctttatttttctttatagttGTGGCAAATCAAATTTAGCAATCCTTTTTAAACATAggatcaaaacattaaataaaataatcaaaggaATTTTAATACTATAAGAatactgattacatttttaagattgTTTCAGACTTGAAGCAACTGTGACAAGTTGGCTGTTTAACGCTCATTGTGTAAATATTCTGCTATTTCCTATTTTGCAGATTTACTACTTGTAAATAAACACACGCATCAAGGagagattaaacatttttttgctaaataat

Function

GO: NA

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU21108 True 697 lncRNA 0.33 1 37414114 37414810

Neighbor

gene id symbol gene type direction distance location
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding downstream 712132 36682750 ~ 36701982 (-)
AMCG00016953 LOC107715024,LOC107664194,LOC102787184 coding downstream 844103 36566281 ~ 36570011 (-)
AMCG00016952 NA coding downstream 1134437 36252375 ~ 36279677 (-)
AMCG00016944 lhfpl4,LOC107716887 coding downstream 1689081 35724533 ~ 35725033 (-)
AMCG00016942 NA coding downstream 1929218 35457197 ~ 35484896 (-)
AMCG00016955 plxna1,LOC106572368 coding upstream 3617 37418427 ~ 37499161 (-)
AMCG00016957 plxna1,LOC106572368 coding upstream 121063 37535873 ~ 37569505 (-)
AMCG00016956 plxna1,LOC104944641 coding upstream 272205 37687015 ~ 37688235 (-)
AMCG00016958 tpra1 coding upstream 647263 38062073 ~ 38071943 (-)
AMCG00016964 NA coding upstream 677239 38092049 ~ 38114746 (-)
G16992 NA non-coding downstream 77004 37241759 ~ 37337110 (-)
G16988 NA non-coding downstream 218036 37195762 ~ 37196078 (-)
G16986 NA non-coding downstream 239951 37173881 ~ 37174163 (-)
G16979 NA non-coding downstream 704759 36709151 ~ 36709355 (-)
G16927 NA non-coding downstream 1061936 36351953 ~ 36352178 (-)
G17033 NA non-coding upstream 400767 37815577 ~ 37816017 (-)
G17039 NA non-coding upstream 443514 37858324 ~ 37858524 (-)
G17094 NA non-coding upstream 674869 38089679 ~ 38117255 (-)
G17140 NA non-coding upstream 910440 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 924765 38339575 ~ 38339875 (-)
AMCG00016938 NA other downstream 2015084 35395992 ~ 35399030 (-)
G16563 NA other downstream 3306173 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 3900535 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 3979463 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 4235231 33176076 ~ 33178883 (-)
G17032 NA other upstream 343347 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 460440 37875250 ~ 38058939 (-)
G17421 NA other upstream 3801841 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 4522116 41936926 ~ 41938563 (-)
G17842 NA other upstream 5393901 42808711 ~ 42864616 (-)

Expression


Co-expression Network