G17254


Basic Information

Item Value
gene id G17254
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38747625 ~ 38860772 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21400
ttttgttgttttttttgattttcaaaatatttttttattttttttccctcacaaagttttcaaattacaaatgtcttctatcaaagcaaagaaaaaaattaccaaaatatgtatttgttttgttgtttttttccctctaaaaatgcaaaactattaAATAACTGCACAAGCAATGAAGTGTAAAACAGTTATAATGTCATATTGCCACAGATTTAGGTTTGGTATTACAGTACAGGAAGTGGGGTTTGAACAGGAGCATCCTGTCCATGCCAGAATCATTGAATAAAATGATCCATCCCAAAATAATTTCACCGCTGAATCATTCCTTTACAGGACTGTGCATGGATCTAAATAACAAATGGTCCACTGCTTGCCCTTTCGCAGTAACTGGTAGATTTACCAAATTATTTTCCCAAATCAAGCTGATTTCAGTAAGAGACAAACAAGGCTACTTGTTccatttcaaatttaaactaTCTTGATCTAACAAACAATTTCCAACTAGAGGTAATTGTGCTTAATTTTCCTTCCATTTGACATTGTAGTACGCATACCTTGGTTCAGAACTTGAAGGAACTGTACATAGAAATGGGTTTGGTTGGACACTCAAAAGGGCACCACAAAGTTGTTGACCgtatgtttttaaatccatgcctaatgaagtttaaaaaacaaacagattaaaaaatattttggaaatggtaccagtttaaaaatgctgacGAAAAATCATGACGgcacaatcaaataaaaaaattaaaaacaatcacagtTGATTTAGGTATCTAACCCACATCCAAAAATATAAAGCTTTGAGTGGgcaggggaaattaaaaaaaaaaattataagatATACATGGAAATGGCAACGTACAAGGGGGATCTCACAACCTGGGTTTCGTCCTTCACCGAGACATTTGGATGTTCCAATTTAGTATCTTAAAAGATCTTAACATGGGATTAGAGCATGGAGCTGGAAGGGAGACCCTTAATGTAACGAGGCACGGCCCTGTTAAACTGACGTCGGATTACCCTTGGTCAACTGTGAACACTGCTGGGCCACTGGATGAGAATATTCTAGCATTAGCCTAACTCCAATTCACCATTTCATCTGGGAGGTGGACTGATGTAAGTCTCGGACCCCTTTCCAAGAAGGCAGAGCTGCATGTGCTATCCATCAATGCTGACAGACCTCTAGGGCTTGGAAAGACATCCTATATTGTGTATCCAGTGTATCCAAGCTATGCCACACCATGCGTCATAGTTTACTGCTTGAGGAGAAGTGTTCAGTTCAGGCTCCGGTTTTGATACGGCAATGAAGGCCTGGCAAACTAAGCAGGAGGTGGGTTTTTCTTCCTCATTTTACTTTGCAATTtcacaaactaaatatatatatatatatatatatatttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21400 True 1424 lncRNA 0.36 4 38747625 38860772

Neighbor

gene id symbol gene type direction distance location
AMCG00016969 NA coding downstream 233858 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 376375 38360534 ~ 38371250 (-)
AMCG00016967 NA coding downstream 527788 38182302 ~ 38219837 (-)
AMCG00016961 NA coding downstream 573301 38171152 ~ 38174324 (-)
AMCG00016962 NA coding downstream 583965 38149505 ~ 38163660 (-)
AMCG00016978 sec13,LOC107557974 coding upstream 358052 39218824 ~ 39237899 (-)
AMCG00016987 pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193 coding upstream 966468 39827240 ~ 39855114 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 2027587 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 2128494 40989266 ~ 40990660 (-)
AMCG00016991 LOC103386478,LOC108431596,LOC103131950,LOC102219775,LOC106954144,LOC106583731 coding upstream 2176580 41037352 ~ 41038674 (-)
G17225 NA non-coding downstream 16790 38707084 ~ 38730835 (-)
G17171 NA non-coding downstream 351806 38394501 ~ 38395819 (-)
G17170 NA non-coding downstream 354305 38393081 ~ 38393320 (-)
G17166 NA non-coding downstream 355553 38391670 ~ 38392072 (-)
G17164 NA non-coding downstream 361464 38385821 ~ 38386161 (-)
G17275 NA non-coding upstream 218643 39079415 ~ 39079892 (-)
G17277 NA non-coding upstream 253369 39114141 ~ 39114389 (-)
G17294 NA non-coding upstream 440674 39301446 ~ 39303623 (-)
G17325 NA non-coding upstream 533721 39394493 ~ 39396855 (-)
G17364 NA non-coding upstream 934203 39794975 ~ 39800840 (-)
AMCG00016959 NA other downstream 688686 37875250 ~ 38058939 (-)
G17032 NA other downstream 989154 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 3348595 35395992 ~ 35399030 (-)
G16563 NA other downstream 4639684 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 5234046 33488725 ~ 33513579 (-)
G17421 NA other upstream 2355879 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3076154 41936926 ~ 41938563 (-)
G17842 NA other upstream 3947939 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4088219 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 4419465 43280237 ~ 43286603 (-)

Expression


Co-expression Network