G17414


Basic Information

Item Value
gene id G17414
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 40873372 ~ 40878065 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21612
CGGAAGTGGAGCATTCAAGattctatgttttatttaagctttttgatggattttttttccttcactttgTGCAATGAATGCTAAATTCACAGAGGTCCTGCAGCAAAGAAGAAGTACGTCAGCTACAATGACCTTGTTATCTAAGGGGTGCCAGCAAGGGAAGGAAGTGACCCATGAGGATGCTTGGTCTCCTGCCCCTTGGCAAAAGAAAAGGCTATTTCCTGTCCCGCACAGAACTGGCGGCCCACGAGAGGAGTGTTTTTGGCCAGAAGAAATTGGCAGATTTTAGGTGGACGATGGAAATACGTCGGCGAGTTCTGtaaacaacatgaaaaaaacaaaaacaaaaaaaaagactactTTCCTCGTTTAGAAACAAAccgtaaaaaaatatttggttgatcgaacaaacaaaagaaaaacctcTTGGATTACGGAGACCCACTGGCACTGCAAGGAAGCTCCAGACTCAGGCCTTCTCTGATTATCACAAAGCTAGTTTCTCCACCCACTTAGTGATCTTAAAGTGCATCACATCAAAGAGGAACATCAGAGGggctcgtttttttttttgtctttacatGTACTTCCAAATTGCAAGTTTCCTGTaaagtttatgattttttagtttttttgtttggcatacctgttattttgttgttagttttttcacttttgtttctttttttttgcttcttgGATGCACACGATTAAAGCCATATTCTTCTCTAAGAGATGTCTGTCGCTttcctttcattgtttttctttttttttctttggtttgggATTTCCAGTTAACTcttaaaaaatgtgcatttgttaactttttttttctatccttCCGTAGCTATTAGTTCTGTATAGTTGTGTTTGAATACTTTGTCGGAATATGTTGACCATCGACTGTGTTTTGAGTGACTATCGGAAAGTTCTAGTCCTTGTCTGACTGGCTTTAACTAAACTACAGTGATGGATGGTATTACAGATGTAATGAGGTGTTCACGTAGAAGTTGCTAATGCATGCCTGATATTTTTGGTGTTTAAAAAAGATTTTACAACGAGGCTGTGATAATCAGCCTGCTCTGGAtagctttttcttcttttcattttctgtatgaTTTCTCAGATGTTTTAACACAGGGGGAATATGGCTTTAATTTGTCTTGGAGTTTCTTATTGCCCCGCAACTATGGAAAATTGTGAAGaggaattattattaaaaaaagaaaaaaaaaagcatgtatgttttatactgtttgtACTAAGTATATTTATGTTGCCCTTGCTGCTTATGTGCCAATTTTGTGGAAGACATTTATGTTTGCCACTCATGCAAGTATACCGTGGTATTGTCCAAGAATGtatcaacatgaaataaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21612 True 1382 lncRNA 0.37 2 40873372 40878065

Neighbor

gene id symbol gene type direction distance location
AMCG00016987 pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193 coding downstream 1018258 39827240 ~ 39855114 (-)
AMCG00016978 sec13,LOC107557974 coding downstream 1635473 39218824 ~ 39237899 (-)
AMCG00016977 LOC108436697 coding downstream 1979853 38822108 ~ 38893519 (-)
AMCG00016969 NA coding downstream 2359605 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 2502122 38360534 ~ 38371250 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 10294 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 111201 40989266 ~ 40990660 (-)
AMCG00016991 LOC103386478,LOC108431596,LOC103131950,LOC102219775,LOC106954144,LOC106583731 coding upstream 159287 41037352 ~ 41038674 (-)
AMCG00016993 LOC106583731,LOC105007334,LOC107661916 coding upstream 228626 41106691 ~ 41108161 (-)
AMCG00016999 NA coding upstream 650591 41528656 ~ 41530149 (-)
G17384 NA non-coding downstream 588549 40280538 ~ 40284823 (-)
G17383 NA non-coding downstream 607111 40264597 ~ 40266261 (-)
G17364 NA non-coding downstream 1072532 39794975 ~ 39800840 (-)
G17325 NA non-coding downstream 1476517 39394493 ~ 39396855 (-)
G17294 NA non-coding downstream 1569749 39301446 ~ 39303623 (-)
G17423 NA non-coding upstream 366861 41244926 ~ 41245225 (-)
G17505 NA non-coding upstream 723859 41601924 ~ 41605395 (-)
G17755 NA non-coding upstream 1666295 42544360 ~ 42549418 (-)
G17754 NA non-coding upstream 1672260 42550325 ~ 42551773 (-)
G17910 NA non-coding upstream 2357740 43235805 ~ 43236036 (-)
AMCG00016959 NA other downstream 2814433 37875250 ~ 38058939 (-)
G17032 NA other downstream 3114901 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 5474342 35395992 ~ 35399030 (-)
G16563 NA other downstream 6765431 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 7359793 33488725 ~ 33513579 (-)
G17421 NA other upstream 338586 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 1058861 41936926 ~ 41938563 (-)
G17842 NA other upstream 1930646 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 2070926 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 2402172 43280237 ~ 43286603 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G200492 NA unknown NC_053131.1 CM020928.1 6677658 ~ 6682591 (+)
tiger barb (Puntius tetrazona) G183181 NA non-coding NW_025048113.1 JAEQBD010000458.1 39825 ~ 63062 (+)