G17514


Basic Information

Item Value
gene id G17514
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41713810 ~ 41716989 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21735
ctCAGTTCATGTCATTTATTTGGTAATGCTTCAAGCTCATTATACAACAGTATTATCTCCTCTCTTAACTCTCGTCTCACAGAATCTTTCAACATACTTTAAGCTTCACAACACTTGAGAAAAATGTCCtttacctttttaatatttttgaaaaaacaaaacaattacagtcCAGTCTTCCAGACACATTCTGATAACCTATCTTTCAGCTTCTTCCACCCGATTCCATCTGATACTTACAAACCCCCACCAGTCACCTCTCCAAAGAACATTACCAAACAACcatgagagaaaacaaaaacaaaaaaagcaattcaCCGTGtgtaaaaactataaataaatgttctagAGGATAAATCTGAacaatacttttctttaaaaagaaagaaaaaaggcataTATTTTGGATCATTTATAGTGATTATGATGCCACATTGATTCCTTTAACACATGTGActtttatacaaaaacaaagacacaaacattaCTCCAAAAATAAACGTACACATGAGAttacaaaaaactgaacacaaaGATTTTTGGCAATAATTTAGCAGTCATATTTTGTGCGGTCATGGGACAGTCCACCACAAATCCAGTGACTACGGCTGCACTGCAGAGTACATGGCATGAACAGctacagtatttaattaaattgtaataattacCTTCTGCTTCTCTTTTAAGTGTAATGTGGTGGCAATTACACTGCAAATGATTACCTGATGTAAAAACACCCAAACCTACATCATACTGGCTGTTCTGCACATGATTTATTATACAGTTTTACACAATAGACGTTTCACCTGCTGATGGCTATTTTTGTACATGTTCTGTTCCGTGCGATTCGTTAACACTCACTCCCACCACCTGTACAAACCTAAGACCCTAAACGGTAACAGTTTCCATTTCTGGCTTCAGAGGGGTCAGACATGAGGAGCTGCTGATTGCTCCTTTTACATCTCTACAGCAATACTGCTACAGTCTGCCAATTCTGTCAATGCAGCCTACAAAGTAAGCCACTCCAATCCTGCCAagggatgaaaaaacaaaaacttgatcTGAAAAAGAGCTACGGAGTAAATAAGCAGGATTTTATGGCCAAATTATATACTCTTTATGATTCCCTCATTCCAATCAACTTAGGttaacttgcagtctggagtaAAGCCCATTGAGTAGCCCTTGGTGCGATCTAGTGTTCAGACTCCTCTTAGAACAGAGCAGGCTAGGGACAGGGCATGCTGGGTAAGTCTCCTCACACCTCAGTCACAGAGGGCTCCGGTTCTAGTCCCTTCTCATCTGATCAGTAAAATCCTCCACcagaaaggaaacattttcatttttttttagtcaTGATACACAGTACTGTGAAGTATAAATCCTTCTATTAAGcttatttaaaagatttttcCTTACTGCTGTTTCTCCAAGTATTTCTCTTTCACTGTGCGATGTCGACACTGAAGACTAACTTTGAGATCCAATTGCTTCCTTCTGCCCCCCTTGGCACCTTTGCCATCCTGGGTTATAATCCCCTGTGGGACTGACTCCACTCTGCATTACCCAGTGATGGTAACCCTAGGTTGTCGTAGGGCTGGCCGGGCAAGTGGCCTTGGATCTCTAATCTTTCAATGGCAGGCAGGCACTCGGAGTGAGATGCTAAGTGCTGTGAATGAGGCTGCCTCGGCCAAGTCCAATACTCAGCACCGAGTTCATAGTTCATCCTTCGTCCTGAGCACACAAGGGTAGTAGAGAGAAAAAAGCACAGGAAACCAGACCCCCTCCCCTTCACAAGAAATCACAGCAAATGGTCAATTATCCAAGTGTGCCCTCATCCCAACCCCAATTGTGACATCCTGAACCCCCCCCTCCATCCATACACTCCTCCAGTAATAGAGCACCTCCCCACCCAAACAGTCAGCCCAGCAGGTACAAATCAACCTACTGCCAGCTTTCCCCACCATGCCCAAATGCTCTACTGATTGTCCTAAAAACATTCTGCTGGTCATTGTCTGGATACGATGTAAACACTATagattctaaaatatatatctataaacaatatatatgtatatgtatatatacatacacacacacacacacacatacttatacatatatacacactaatacatatacatattggTGTGATTTTGTCAGTAAGTGGGCAACAGTACTGTGAGGTGGTAGATAGCAGTGTCCTTGGGGCCTGGTGAGTCGATGGCAGGATGGCAAACACTCCCTCCCCCACCATGCTCTCCCTCAGTGTCAGCTGATCTCTCTGTCCCAAGACTGCAGGCCTCACTAGCAGAGCGGCAGGGGGAAAAATATAACCCACAAACAAGAATCCTGAGGAGCCAGAGCTGCTGTCACCCTCTTCCCTGCTGGTCCGAGAAAGGGACCCAGGTAGGACCCACACTCACAACACCACAGTCTAGTAGAAAAACACGACAGATGAGAGAAGCCGCACTGAtgctggttaaaaaaaaaactaaacaaaaaaactaaacaaaacaaaaacaaacatttgaaaaaaaagaagtgcTTTTCATAAACTGCGGCGGTGGGTTCCAATACTGTACAGGTAAGACTCAGCACCGGGTTTGTAGTTCTCACACCTGTATGGGCCGGCTGCAGTCTGTGCCCTCCATCCGAGAGCAGTCTGCGCTCGCCTCGCTGGTGTCCATGCTACAGTCTGAGGACTCGCTGTCACTCTGGTCCATGCGTTCTGGCTTGGGGGTGTCCCGCACGGGGGACTGAGGGGACTGGGGATCCGGGTCACCGCCCCCGGCTGCACCCTTGGCCTGCCGGATGCAGTTGAGCCACTGCTGCTTGTTGAAGGTATCACTGGCCTGGAAGGAGTACGACTGGGTCTGTGAGCCGCAGCGGAAAGTCACACGAAAGAAGTTCTTGGCTGGAAGAagaagggggaggggaaggaggTTAGGGATGGATGGAGGAGGGACGCTTGGGCTGAAATGCAGCTCCAATCAAAAGCAGAGTTTGTTGACTTCGGCTAAGGGACAATTACACTGCAGCACAAAAACGGCATAACTGGAATCCTGCAGACTACAAAAACAAGAGGATAGGAAGCCAAATGCTGAAGCTGAAGGTGAAACTGTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21735 True 3128 lncRNA 0.44 2 41713810 41716989

Neighbor

gene id symbol gene type direction distance location
AMCG00017000 NA coding upstream 43433 41658589 ~ 41670377 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 217539 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 248989 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 256608 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 267200 41433692 ~ 41446610 (+)
AMCG00017011 NA coding downstream 226560 41943549 ~ 41952515 (+)
AMCG00017010 NA coding downstream 236758 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 349883 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 377422 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 393040 42110029 ~ 42110696 (+)
G17498 NA non-coding upstream 23611 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 40457 41671378 ~ 41673353 (+)
G17482 NA non-coding upstream 108419 41601948 ~ 41605391 (+)
G17424 NA non-coding upstream 468291 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 497001 41216495 ~ 41216809 (+)
G17518 NA non-coding downstream 25361 41742350 ~ 41742773 (+)
G17580 NA non-coding downstream 259406 41976395 ~ 41978666 (+)
G17882 NA non-coding downstream 1336097 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 1518831 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1677304 43394293 ~ 43394499 (+)
AMCG00016979 NA other upstream 2459320 39239073 ~ 39254490 (+)
G17193 NA other upstream 3210178 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6509578 35158597 ~ 35204232 (+)
G16550 NA other upstream 7612947 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7614214 34093276 ~ 34099596 (+)
G17697 NA other downstream 674308 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2409225 44126214 ~ 44137931 (+)
G18192 NA other downstream 2937663 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3232045 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7655033 49372022 ~ 49382218 (+)

Expression


Co-expression Network