G19114 (raf1,LOC108276324)


Basic Information

Item Value
gene id G19114
gene name raf1,LOC108276324
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50559450 ~ 50563278 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23711
GCTAACCCCAGGAAAGAGGTCCTTTTGTTTGCACCACCACCTCCCACCAGCCCCTCTGGCTATATTTGACTGATTTGTCCAcacagaatcttttttttttttccttcctgtcACAGAGAGCGTTCGACTCACCCATACCCCGTTNNNTTTCCACACAGATCATTTTCATGGTCGGCCGAGGGTATTTATCTCCAGACCTCAGCAAGCTGTACAAGAGCTGTCCCAAAGCCATGAAGAGGCTTGTAGCAGACTGcattaaaaaggcaaaagaCGAGAGGCCGCTCTTCCCTCAGATCTTGTCCTCGATAGAACTGCTGCAGCACTCGCTGCCCAAAATCAACCGCAGTGCCTCGGAGCCGTCCCTCCATCGAGCCTCGCACACCGAAGACATCAACTCATGCACTTTGACCTCCATGAGGCTGCCTGTGTTCTAGCACCGCCTCCCTGCCCCACCCCATCCAGGCCAAATACCCTCAGCTCAACAGAcggaacaaaaacaacacaacagtgcaatccagtgtatgtatgtgtatcaCTGCAGCCGGTGCAATCACACTGCAGCACCAATAATAAGAACTTAACAGGTGAGAGAGGGTATTCAGTTGTATGAAGGACATGAAGCTTTGTTCCTAGTTTTCTTACTGCCCCTCCATCTAATGGGGAAACAGCGCGATGGCCGACACACGGAGAGCCAGACTACTTTTCAAGACTGCGGGAAACGAATTCAACAGGATCGTTTGGAACAGTTACAGGATTCAAGAAAACCAAGAACTGCAAACCTGTTGAAAACCTCTTGATTCTTCTCCATTTAGCAGTTAAGTTTCACTTAATGGTGAAACAATGCTGCACAAACCCATGAAATGGAAGTGTAAAATTGGTAAAAAGTAGGACAATACTACACAATTATTCCCAACGTCATGAAATCCCAGCCTCTATGGTATGAACCTTAACTGCAGGTAAACTTTAAGGGAAAATCTCTTGTTGGTGCTGTGCACACAATTACTATATTTTCCTGTCATGCAATCACCCcatatggaaacaaaattaagagATGTGAGCATTggattgtttttggttttagcTCTATTTAAGTAATCAGTGCTGACTTTCTACAACACCggtcaaaggttttagaacacctacatttttccagttttcattgaaatttacaatgtttaatgtctcaatgtactctgaaattaaagcatagaacaaataaacaattggattccatgatttctttaacaaaatttaaccccttaagctgacaaacaaaccttaaaagggcaccaaatccatgtgcttctccttaatcccatgtgtactcttcactgttgtgtttgccaagtgtttggtctCCCATGAAAGCCGAGACTCTCAGCTTtataacgatgtgaagcattctcggatgtgaaaaatgtgttttttataaccacccgcattctgaaatgggggggtggggtgatAC
>TU23712
GCTAACCCCAGGAAAGAGGTCCTTTTGTTTGCACCACCACCTCCCACCAGCCCCTCTGGCTATATTTGACTGATTTGTCCAcacagaatcttttttttttttccttcctgtcACAGAGAGCGTTCGACTCACCCATACCCCGTTNNNTTTCCACACAGATCATTTTCATGGTCGGCCGAGGGTATTTATCTCCAGACCTCAGCAAGCTGTACAAGAGCTGTCCCAAAGCCATGAAGAGGCTTGTAGCAGACTGcattaaaaaggcaaaagaCGAGAGGCCGCTCTTCCCTCAGATCTTGTCCTCGATAGAACTGCTGCAGCACTCGCTGCCCAAAATCAACCGCAGTGCCTCGGAGCCGTCCCTCCATCGAGCCTCGCACACCGAAGACATCAACTCATGCACTTTGACCTCCATGAGGCTGCCTGTGTTCTAGCACCGCCTCCCTGCCCCACCCCATCCAGGCCAAATACCCTCAGCTCAACAGAcggaacaaaaacaacacaacagtgcaatccagtgtatgtatgtgtatcaCTGCAGCCGGTGCAATCACACTGCAGCACCAATAATAAGAACTTAACAGGTGAGAGAGGGTATTCAGTTGTATGAAGGACATGAAGCTTTGTTCCTAGTTTTCTTACTGCCCCTCCATCTAATGGGGAAACAGCGCGATGGCCGACACACGGAGAGCCAGACTACTTTTCAAGACTGCGGGAAACGAATTCAACAGGATCGTTTGGAACAGTTACAGGATTCAAGAAAACCAAGAACTGCAAACCTGTTGAAAACCTCTTGATTCTTCTCCATTTAGCAGTTAAGTTTCACTTAATGGTGAAACAATGCTGCACAAACCCATGAAATGGAAGTGTAAAATTGGTAAAAAGTAGGACAATACTACACAATTATTCCCAACGTCATGAAATCCCAGCCTCTATGGTATGAACCTTAACTGCAGGTAAACTTTAAGGGAAAATCTCTN

Function

symbol description
raf1 Enables enzyme binding activity; identical protein binding activity; and protein serine/threonine kinase activity. Involved in several processes, including activation of adenylate cyclase activity; positive regulation of MAPK cascade; and positive regulation of peptidyl-serine phosphorylation. Located in Golgi apparatus; cytosol; and nuclear speck. Colocalizes with plasma membrane. Implicated in Noonan syndrome (multiple); Noonan syndrome with multiple lentigines 2; adenocarcinoma (multiple); and dilated cardiomyopathy 1NN. Biomarker of colorectal adenocarcinoma; colorectal adenoma; and prostate cancer.

NR:

description
PREDICTED: RAF proto-oncogene serine/threonine-protein kinase isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23711 True 1468 lncRNA 0.44 4 50559450 50563278
TU23712 False 980 TUCP 0.47 3 50559450 50561788

Neighbor

gene id symbol gene type direction distance location
AMCG00017207 NA coding upstream 21780 50526813 ~ 50537670 (+)
AMCG00017206 NA coding upstream 36908 50517042 ~ 50522542 (+)
AMCG00017205 NA coding upstream 46095 50501043 ~ 50513355 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding upstream 82695 50458963 ~ 50476755 (+)
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding upstream 113653 50441547 ~ 50445797 (+)
AMCG00017212 LOC106583855,LOC107742030 coding downstream 51961 50615239 ~ 50621947 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding downstream 68830 50632108 ~ 50638968 (+)
AMCG00017211 NA coding downstream 81834 50645112 ~ 50652585 (+)
AMCG00017209 NA coding downstream 101048 50664326 ~ 50672185 (+)
AMCG00017217 NA coding downstream 133568 50696846 ~ 50711492 (+)
G19062 NA non-coding upstream 207503 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 217300 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 224944 50333760 ~ 50334506 (+)
G19058 NA non-coding upstream 226084 50332466 ~ 50333366 (+)
G19042 LOC103376870 non-coding upstream 403625 50155453 ~ 50155825 (+)
G19146 NA non-coding downstream 68100 50631378 ~ 50631634 (+)
G19152 NA non-coding downstream 77309 50640587 ~ 50640802 (+)
G19195 NA non-coding downstream 164462 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 574015 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 732554 51295832 ~ 51296718 (+)
G19113 NA other upstream 6465 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 831883 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1155605 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1177232 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5597849 44949034 ~ 44961601 (+)
AMCG00017280 NA other downstream 2250975 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2257783 52821061 ~ 52834042 (+)
G19683 NA other downstream 2772631 53335909 ~ 53339655 (+)
G19754 NA other downstream 2940154 53503432 ~ 53536464 (+)
G19829 NA other downstream 3227269 53790547 ~ 53792694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_05808363_05825783 RAF1A coding CI01000021 null 5808193 ~ 5825838 (+)