G19275


Basic Information

Item Value
gene id G19275
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51295832 ~ 51296718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23904
GTCTTACACAGCGCCTGTGCAGCTGATCAATTTAATGGATtgaacatataaaaataaagcacaacaaAGAAACccacattttgtacaaaaaacaaaacaaaaaaatagttcAATTTTGTAAAGTTTGATCTGAGTGTATTTCAATTCTGAGGAGTTGATACAAGATTCCCATTGGTAACTAAAACACTGCAATAGATAACCACAGTAAACCTTGTTAGAAATGTACatataaccaaaataaaagaaaaggcatGATGGCAGGGTTATACCACATAgctgcttaataataataacaagaataataacaagaataatcaattataataacatgtattaatGTCTTAAGAGAGCATGTTTCTAATTGAGGCCCTGTTACAGTAAGCACCAGAgccttgaaaacaaaatcatgacagaaaaaaaaaataaaaaataaaacatatatatataatttcggTCCTAAAACCAATTGCCGAGCGcctgaaaaaaatgcaaacaaggcCTCAGAACGTATTGTTTAGTTACTGTTACCAGATTCCTAAAAGAAGACTTCCACAagctgataaaatatttaaaaacaaagctcttaagaaatgtacaaatataaaaagctacaaacattaataaattacatcacagacacagaaaacactTCACAAGGTGCTAGTGAAATAATTTGAATCCCATCAGGTTACGAGGACGAAAACAAAGAGCTGGTCGCAAAAACAGAGGCTTTTTTCCCCTAAAAGCTTCATCTCTTGTTGCAGGTGAATCATAACAAtgcagttgtttgtttgtcgAGTGTAAGGCCATACTAAGTTGGTTTCATTTTTCAGGCAACACCacaatctaaaaaacaaacttaaaaaaaaataaagccctACATTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23904 True 887 lncRNA 0.32 1 51295832 51296718

Neighbor

gene id symbol gene type direction distance location
AMCG00017230 NA coding upstream 81316 51214259 ~ 51214516 (+)
AMCG00017231 NA coding upstream 83441 51212179 ~ 51212391 (+)
AMCG00017229 NA coding upstream 119373 51169613 ~ 51176459 (+)
AMCG00017226 NA coding upstream 130584 51159919 ~ 51165248 (+)
AMCG00017227 NA coding upstream 227507 51048621 ~ 51068325 (+)
AMCG00017243 NA coding downstream 342919 51639637 ~ 51640615 (+)
AMCG00017238 NA coding downstream 350686 51647404 ~ 51649518 (+)
AMCG00017237 NA coding downstream 356812 51653530 ~ 51663841 (+)
AMCG00017246 LOC106571974 coding downstream 426981 51723699 ~ 51725528 (+)
AMCG00017248 LOC107743249,LOC106566685 coding downstream 461007 51757725 ~ 51827775 (+)
G19245 NA non-coding upstream 156997 51137293 ~ 51138835 (+)
G19195 NA non-coding upstream 567681 50727740 ~ 50728151 (+)
G19152 NA non-coding upstream 655030 50640587 ~ 50640802 (+)
G19146 NA non-coding upstream 664198 50631378 ~ 50631634 (+)
G19062 NA non-coding upstream 943885 50351252 ~ 50351947 (+)
G19292 NA non-coding downstream 43195 51339913 ~ 51340117 (+)
G19366 NA non-coding downstream 268571 51565289 ~ 51571994 (+)
G19465 NA non-coding downstream 810230 52106948 ~ 52116341 (+)
G19515 NA non-coding downstream 1251031 52547749 ~ 52548031 (+)
G19588 NA non-coding downstream 1500214 52796932 ~ 52802211 (+)
G19114 raf1,LOC108276324 other upstream 732554 50559450 ~ 50563278 (+)
G19113 NA other upstream 742847 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 1568265 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1891987 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1913614 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 1517535 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 1524343 52821061 ~ 52834042 (+)
G19683 NA other downstream 2039191 53335909 ~ 53339655 (+)
G19754 NA other downstream 2206714 53503432 ~ 53536464 (+)
G19829 NA other downstream 2493829 53790547 ~ 53792694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) rbm24b LOC106596654 misc NC_048566.1 CM023220.2 6855864 ~ 6868976 (+)
eurasian perch (Perca fluviatilis) G43452 NA non-coding NC_053115.1 CM020912.1 33867580 ~ 33868547 (+)
tiger barb (Puntius tetrazona) G83830 NA non-coding NC_056709.1 CM032078.1 21979751 ~ 22043312 (+)