G19465


Basic Information

Item Value
gene id G19465
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52106948 ~ 52116341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24151
TCAGAAAGAAAGTCACCTTTATTGAATGAATATAAACGAGCTGATACATATAATAACAATGTTGGGAATTCTAGATACCTTTCATTTTACACATCTACAAGACACAAAGTTACAGCGACTGCCAATTACATGCCCATGTTTAACTCTTGAGGATTTCTTCGTACCATATCGTAATCCTTACCGTATATTCAATAACACAACCCAGAACATGCCACACACtaagaaaaatgtacaagaaGCACTATCAACTGAGGGTCTAAAGAGACATCAGGGAATACAGACCCCATGGCTGCAGCACACCACATCCAAACACCACTCTACACAATCACATTGCTGATGTACTTTGTGTCACCATGTTCGAGGTCTGCTCCGGAAAAAACACTGTTCGTACAGAAAGTTGCCCCACTTTCAGATGAAAGTCATTTAGCCGTGACGTGCATACTGGATACACacattgtattaaatacaaaatcgTTACTGTACAGCAAAAATTATGGACATAACAAGTAGTACAATCCCAAACTGAATAATATtcaatctgtttaaaatatagaaaaaataactaGAGAGGATtaacgtttttgtttttaataaaatgaaaaacaaaccaacgaaaaaaaacaatcaaacaaaccaacaaacgaacaaaataaataatattaaaaagacaatttgcggtctttaattaaacacaaaatgcttCCATTTGTCACAGTGTTTACTTAACCCAGAGATTTGCATTTTGGAAAACCGAAAGGAGATCTTTTGAAATCTGCTCCTCGCGTACAAAAATGCAACCGATTCCTTTTGGTAGGACAGGCCGTCTTCAAACCCCCACAGGGCCGATTGTGTCAACCCCCGTGACACAACCTATCAATTATCGTCTTtcaacacagagaaaaacagattGACCCAATGTTAGAACTGCTCCAAAATTGGCACATTTCATAAAAAAGGAATCTACATCTGCACATTGCTGTCTATGTTACGTTCTCTACTATATATTAGTTTTTCATGGTAGGAAATCCTACTTCAAGTATTCAGTAGTAACGTTAAGGACCTGATAAAAGGAGACGCAGAATATCTTCCCATGATGCAACATTAAAGTGAATGTTCGGGATCCTTTTTCAGCAACGTATTGCCAACTTTCTTTCTGAACACATAGTATCTCCTGctgttaaaacaataaactatAGGCACCTGCTAATTAGTAAAGAATGCCCAGTGAGTCTGACTGAAACGTTTATGAACCttctatatatgtttatatatatatatatatatatatatatttacatttactcccacactgatacacacagacataaaaaagtgtctctctctttatcaGAGGAGAGAATAAAAATTGCACGTTCGTCTGCATTTCTGCGGAAAAATctgaacaaaaactaaacaagagcTTTGTTAGTTCGAGAAAAGTACATTCAACCAGGTGTGTGCTACCAGATGGATACCTTTCTATGACGGGGAGAACCTTTTAAAAccctttttaatacattcaagCGACAGTGAGGAGAACAAACGACGACTGCAAATGGGAACATCAGACCGAAAGGAAGTTGGCAACGCATTGGTACACGAGATCTCGAAAGTCACTTTAGAGATGTTAATAACTGTCCTTATTCACAAGTGCAATTTTTGTCAGCTGTGCTAAATAATCTCAACACCACTGTATTGTTTCCCATGAACCAAAAATGTAGAACTGCGGTTTCACTTCACCAAGGAGGGGATCTGACGTTGACCGACAGCCGAGGTGAACCGATGGAGGCCTTGGACTCCTTGGTCTGCGTTTTGAAAGAACAGCTCCCCGATTCCCAGACACTTCCAGAACATCACGCGCTCGCTCTCCCCTTTGATTCGGATTGGCTCAGACATGAACATCGCTAATATCTATATACACCCCCGCCCCACCTTGTAAACAGAATGGCACACCAGTAGACCAGGAATGCTCCGGAAGTTCATAACCACAGAATGACAAGACACAGCaagctttttgtattttaaattttcttaaaaacaatatcttaataaatgcaaaagatCCTCGGGTTCgcacaacattaaaacaacGTTGCGCGTCCCAAAAGTGGTCTCTACAGGACACACCCATTCACTTGCTTTGCAGTGGGGTGTGAGGACGCTTCGAAGCTCACGGTACGAGAAACTGCACGAGTGTGCCGGACCAATTCACTATTCACGGTATGAAGCTGAACGATTTCGTCTATGCACTGACAGGATGTAGTAGTCTCAGCTATCAGCTGTTCAGTTATTACATCTCAGAGACGTAACTCTGGGGGATTGTCTGGAATATGGTAGATGCATCAACCAACAAACATATTTCGACTGCTTTTGCTTCTTTTCCCCAggcaagatttatttatttatattttttatacatatattcataattCCTATGACCAAATATAGACACAAAGTAGATTTTAGAGGCACATGCCACTTTGTTCAGAGGGATAATTGTAGTCAACTGTCACTAAAGTTGAGCTGCTCAGTATGGCGTTCCGAAACTAGTAGACATTGTTTCCATCTTGACCAGAGTTGATGCAGGAGTAAAAGACAGACTGTCGCATGGAAAGTCAACAGGACGGTAGAAAAGGAGACTTGCTGACGTTTGAGAAGATCATCCTTCCCAAATGCTTGTTTTTTACCCCTTTACTTCAtctacatagaaaaaaaaaacactttgtagAAACAGGAGTAAACCATTGACATCTGTGCTTAGAATAGCATAAATAACATTAACCCCTTCATCAGTAGCGtattaaaaatgctgaaaaatcATGCATCAATAATTGTTTTCCTGATGACACGGTTATACCATggcttgttttttgtattgatcGTAATCTCAGAAGGTTTTCTTCTCTGAGCCACAGCAGCAGCACGACAACAACAGAGGTATCCTGAAGAATCTGACGATATCTTGAGGGGGCCGGGACGGACCGGGAGGACGCTGGCTAAAACCCGCGTGTTCTCTGAGAGATGGATCGTGGCCCtagcagagagagggagtccGATTCCCGTGGAAAACAAGAGCTCGGCCGGGCCAGCTCTGCATATATCATCACCCTACGAATGAGGATGAGTTGGCATTGACTGCAAAGTGTGCATAGATTTGATTTTTGAACCGTGACGGATACTGCACAGCCGGGACGACTTGGGCGAAGTAACAGGAGGCAGAAAAAGGGACCCAGtgcacccccccacactttCCCATTAAGGCATGCCACGTGTTACAGAGAATATGGACATCTCTGCCTCGAAACTGAAAGTATACAGGTCTCCCCCCAGCGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24151 True 3336 lncRNA 0.41 2 52106948 52116341

Neighbor

gene id symbol gene type direction distance location
AMCG00017253 cacna2d3,LOC103362818 coding upstream 91793 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 121580 51948217 ~ 51985368 (+)
AMCG00017247 NA coding upstream 262094 51838583 ~ 51844854 (+)
AMCG00017248 LOC107743249,LOC106566685 coding upstream 279173 51757725 ~ 51827775 (+)
AMCG00017246 LOC106571974 coding upstream 381420 51723699 ~ 51725528 (+)
AMCG00017267 NA coding downstream 267679 52384020 ~ 52413911 (+)
AMCG00017275 NA coding downstream 624822 52741163 ~ 52743891 (+)
AMCG00017279 NA coding downstream 641122 52757463 ~ 52760504 (+)
AMCG00017288 NA coding downstream 801711 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 814149 52930490 ~ 52933688 (+)
G19366 NA non-coding upstream 534954 51565289 ~ 51571994 (+)
G19292 NA non-coding upstream 766831 51339913 ~ 51340117 (+)
G19275 NA non-coding upstream 810230 51295832 ~ 51296718 (+)
G19245 NA non-coding upstream 968113 51137293 ~ 51138835 (+)
G19195 NA non-coding upstream 1378797 50727740 ~ 50728151 (+)
G19515 NA non-coding downstream 431408 52547749 ~ 52548031 (+)
G19588 NA non-coding downstream 680591 52796932 ~ 52802211 (+)
G19591 NA non-coding downstream 734590 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 741812 52858153 ~ 52863723 (+)
G19641 NA non-coding downstream 817423 52933764 ~ 52935403 (+)
G19114 raf1,LOC108276324 other upstream 1543670 50559450 ~ 50563278 (+)
G19113 NA other upstream 1553963 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 2379381 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 2703103 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 2724730 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 697912 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 704720 52821061 ~ 52834042 (+)
G19683 NA other downstream 1219568 53335909 ~ 53339655 (+)
G19754 NA other downstream 1387091 53503432 ~ 53536464 (+)
G19829 NA other downstream 1674206 53790547 ~ 53792694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) erc2 LOC106583361 misc NC_048581.1 CM023235.2 48866589 ~ 49040356 (+)