G19617


Basic Information

Item Value
gene id G19617
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52858153 ~ 52863723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24335
TCACAGTTTAGAGCAACTCAGGAGAAAAGGCTCATCATGGCATGCTCTACCCTGCCCAGGCGGCTCTTCAGGGCACGCTCTACCTGCCCAGGTGGCTCATGATGGCACGCTCTACCTGCCCAGGTGCCTCATGATGGCACGCTCTACTCTGCCCAGGCAGCTCCTCACCTGCCCAAGAGCTGGACTGTTTGTATGtgattttctttcctccttctCTTCTTTCCCACTTCTACTGCTTTCAACAGGGGAATCCCAGACCAGGGGGTTCTTCAGCTTCAATAGGCTACCCGTGGCGTGTGCTTGACTTCCACCACCCCGAATGCAGACTGAAGCATGTTCTTCAGGGCCTGATATTCACACGTGTTATCTAGCTGATACAAGAAGGATAACGGCTGAGGAGCCACAAACGGTTGACTTGaggaactttattttaaaacaaaaataggacaaataaacaaatattctcataacttaaaaaaatcatccataaataatgaacaaactgattttgtattttatttatctactCACATAGTTTCACCCCACCTCCAAGATATGCAATATGTACTTAGTGCTGCACAcagtatataatttaatatatacacactggaAAATAAGCAGACATGTCCTTGGATTGGGGTGGTGCCTGAAGGAACTGAACACCACAGCTATGTATTTACACAGTACATTAAAACACAGCCTCCCCTTTTGTTACAAACTagcattttctttacatttgtgttttgccaAAACTATAAAGTGACAGGCGATCTCCCGGAGGACAGAGCCGCGTCGTCTCCTTCCCCTCCCTGCACCAAAACAGTACGGGTTTAGAAGTCTTTGAAAAGCCAATCGCTGGATCTTAAGATGATGGACCTCTAACTGTAGATTCTGTTAGAGCACTGTACTACTACTATTGACAATGAGGATTAATAGACCTGTCTAAGTCCTAGAACATGCCAGAACCAGCAGTTACACATGCCAGCAGTAAACATGCAAGTGCCCTTAATGATCACATGATTTGTTTTCACAGCGGTCATTGGAATTACCTGCCAATTAAGCTGCTGTCTGTAGTGGGAGGATAGTGAATTACATAAGTGCCAAAGCACATCTCTCCAGGATACACCAGTAACGTGAAAGCAGAGTATGAGGACCACCATGCTGCCACGTAGACTGGCATTATATGGCAGTCACCAAAGCTCAAATCACACCAAGAATCAAAATGGCCAACCTCACTTTCCTACACTGGCCAAGAACCCAGTCGAGGTCCGTCTTACACGAATTTCACAGTGAATAAAGAGACACAGACTTTGATAGAGCATAAAGATCAAGCTTGGGCTGGTTGGGCTCAGTTAGTAAGCACACCACTCTTGCCATAAAGAAATAGTAAGTGAAGTCACAGCATCAGAAGTAACTGCATCTCGTATGCAAAGAATTTAAAAGTGTTCACACAGGTCCCTTCACAGATCAGCTGGGGTTCGCATTCGAGTTGTGTGCATTTGGAGTTTCTGCCCACCTTGGGGCAATTCATTGTCCACCAAGTCCAAGTGAGAATAAAGGTCTGACCCCCGCCGCAAGCACTCTGCTAGTAAAGAGACCCGAGTGAACCCTCTCTGCAACGCATCCCAAGTTGCAGTCCTGGAAAGGGCTACAGCAGCGGCTCGGGCAGAGGGCACTGCCGCACTCGCACCACAAACATCAAGAAAGGggcattttcactttaaaacagtTCACCAAGTTGAAGACCTTGAGCTTTGGGTCAGCAAGGAAGTTTAATACATTGATCTTTTGCaagcagtttatttgtttgggaggggaaaaaagggtgGAAAGTGTTTTGATCTCCTGGATCAAGTGGAGGCCTCAGCCCCAATGATGCAATACAGGTCAAGGACACAAGGTCAAGCCCAGCCTTGATGGCTGGCTAACCCTTTCAAGAGCGTAACGACTGGGTGTCGATGCAGAACTCTCATTTATAATTTACTCCCCCaaagatgaaaataaagcatttcgGTCAAACCAGCAGACCTGGAAAAGATCTGGAAAAGATTTCAAAATTGCATATTTCACATAATTGTTATACTTTGTAATGTAGTTGTAtttggaaacaaatgaaaacaaaaatgaaacaagaCATGCACACTGGAAGAAATGAGCACAATTTGAACTCCACAACCCACACCCATCCATCATGTTGCTTTTTGATCATTGCTGCTCTAATTATTATCCATTAATCTTCGCCTGCAGTGTATTTTAGGCTGTATTTTGCAAACTACTAAACATCATGTGTTTGACAGTCCCAGTTTTCAGTGCAGAGGGAAGATATTGGCAAATGTACAAGTTAGTAACAAGCCATGCTTCAAGAGTTCATCTCACACCCCACTCATCAATCCACCCTTATTTATAAAAAAGGAATGAGCTGTTGTGAAGTGATACCCACACTTAGAAACATGAGTAAGActttatgcttttttatttagtttttaatccgCATATAGGGGCTTTGGTTTAGTCTCTCAGGGGGGCTAGTGCGATCTGTGGAGTCTCTAACTTCACttcaagaaaactaaacaatcAAAGCCAAGTGGAGCAACCACGTTCTGATTTCCTTTGGTGAACGTGGTGGTTTCTTTAAGCACAGGCTGAGGGGCAAGTGCTTCGGAATTGTGTATATGATTTTTATACATCAATACTAGACTTCATCCTTGCCTCCGATTAATCACTTGTTCCACAAAGGCAAGTTCAACTCATCCTTATCATGGGCAGTCCCTCCATTCAGGGTGCAGAGGAAACAAAGGCCCGGGAAGGACATCCCTGGCAGGTCTGGGGCACCCGTTTACAGACTAGCTTTAAAACAACAGGGGGCTTCATAAAAGGGAGAAGAGAAGTGTTCAAAGGGAATTGTCCTGAGGGTGGTCATATGAAAGGGCACACAACACCCCTCACCAGTACTGTCGCCCCTTACAGGGGTCACAGGTAAGCCCATGCGGTAGTTGGACCTGTATGTGGTTTATAAGGTCACATCTGCACCAGCTGCTCCCCCCACCCAGGCCCTCCACCACACAGCCTCCTTCAGCTGTTAACATGGATCTCGCACAGAAAGCGTCTCAGACAGAAACTTGCATAAAAGGGCATCTCCCGCACATTTGacattcatttcattaaacacaGGGGacgtggtgggggggggcatgtGTGATGTCCTGGTGCATGCATCTTACTAGAGAACCACAAATCAATTCTGGATTGAGAACATTTGGGATTACTCAACCACCAGCCTTGCGTAACAGACATCTCTGGTATCTAGCAGCAGGTGTGAGTGTGGACGGTCACCCAGGAGGCTACAACACCCATGTTGGCCTCAGGCAGTTTCTTCACATTACAAGTGTGCTAACAGATCATATAAAGCTTGTGACACAAAATGAACTGAGCCACAACAGAGCTGAAGCCACACACTGCCTCGCCTGGTCTTTTTCAAGCAAGATAACTGATCAAGGTAGAGTCACCCAAGGAGTTATTCTAGTACCAAAACTGCAGTCGAACTACACAAGACTTAGGTTAATAGATATTTGAGTGACTGTAAGTGGATGATGGGAAGATTTTGACACCACTACAAATTTAGTGTTTTACCAGCATCAACAAATGCCAGATCagagattttaaataaagacaagATGCAAAACTGGCCGAGACTTCCCCCGACTGTGTGTGAGGCTCGTGCAGGGAACGGCAGAAGATAATCAAGGACCCTGCTGAACATCCTCCAAGCACATTCTCTGGTGCGTTCATTTCCACTTGGCTGttggaaacattaaaaaaggaaaatacctGCTAGGCTTCCTCAGTGTCAGTTTGTGAAGTAGATAAGCTCGACCTTGCATCCTCTGGGAGCCCTGCTGCAGTCTGATCTGCGCTTCTAAACAATGGGCTGCGGTGCAGAGAGGAAAGACAGGAGTTGACAGCACGGCCAAGGTTGGCAAGGCCCGGCCCGGAGAGCTCCACTAGAAGGGGTTCTGGCTTTGAAAACCGCAGTCCAAGAGCTCGTCAAGCCCTCTCTCAGGAACATGGCTATCCTGCCACCTTGTGACATGAAGGAGCGCTACACCTCTCACACCTGCCTCTGGCAGATGGCATAACCTggtcagtggttctcaactCTGGCGGAACACTGACCCTGCTGAGCTCTCACTTAATTGAGCCGCTTATTTcaataatttgattacatttgaatctttaaattgtgtaactgataagtTGGTTCCTTGACAAGAATTTCCTTAAACGATTGTATACTTAACTTTAAACCTAccgttaaaaataataaaaaggctgTGATGTAGgaaatgacttcaattaagggttcaattaagtaattgagagatcaATTGGCACAAACCCCAGCAGGGTCAGTGTCCCgccaggaccaggactgagcACCTCTGAGCCAGATGAGCATCGTGTGCTGTCTGGCCTCCCGATTGCTTGCAAAGTTCCCTCCCGCGTGCTGCCGGCTTAAGTGCCATGTTAGTACCAGTGAGAATCAGTTAGTACCTTAGACGGGGCATTGAAAGAAACTGGTGCACATTTAATAACAGGCCAAACGAACCTGGTTTGGGGGCTTGTCTTGAGTGGTGCaactgaattgtttttttattggttggttatttttaaactaatcaTTAACAAATTTCACCAGCTGTTGAACCTCCTCTCCCGGCATCAGGAATCATTCCCACCTAAATAAACACAGCCATCGTCCAGCATCACTGACTGGCAGGTACTGCATTGGTTAAAATGCCAAAGTTTCCACAAGCGCGGTCCTCATCTACTCATGCTTTCAGCATCACTTCCTTTCCTACTGCTCCAACCACGGGTGTCAATTGATCAGTTTgaagcagaaaaacacagattCTCCCTCTCTGGCTCCTCACTAACGCAACGACGTTCTTAGAAAAGTATGCAACCCTACTTGCAGATTTAAATCAtttctcccccccacacacactttgtttttctttcatgatGTCACAAAGATACGTACTGACCTTAAGAACCAGGAGtcaaaacgaaacaaaaaaaatgaacgGACAGTTTTTGCCGATTTTTACATTCCAGGGACGCTAGACTAGATTAGTGAACGGAGCAAGATCGTGTCTTAAAAACCCACTAACATGAGCACATGGGGTTGTATGTTTCACAGATTGCGAGGAACCGGGTTGCTATTGCACGGTGTTTTTTCTCACGCTTTCCCCATCAGTGCCCCCCCGTCACCACCTCCTTCTtctcacagcacacacaccagACCTCACATGAGCTGGGCAGGGCAGGCGACCCATCCACGCGGCGGCACTGTCCGCTCTCCGAGACACCATGGCGAGAATGAAGTTCAAGAGGGGCTGCAAAGGGAGAAGGGGGGGACGGAGTCGCAGGGCGCTGGCTGTGTTTCCTCCAGACGTCGTGGCCTCACACCTCACACAGGACGACGGGGAAGTCGACGTGGATTCGCGGGTGATCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24335 True 5518 lncRNA 0.46 3 52858153 52863723

Neighbor

gene id symbol gene type direction distance location
AMCG00017279 NA coding upstream 97649 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 114262 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 444242 52384020 ~ 52413911 (+)
AMCG00017253 cacna2d3,LOC103362818 coding upstream 842998 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 872785 51948217 ~ 51985368 (+)
AMCG00017288 NA coding downstream 54329 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 66767 52930490 ~ 52933688 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 73177 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 390944 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 422706 53286429 ~ 53302089 (+)
G19591 NA non-coding upstream 3431 52850931 ~ 52854722 (+)
G19588 NA non-coding upstream 55942 52796932 ~ 52802211 (+)
G19515 NA non-coding upstream 310122 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 741812 52106948 ~ 52116341 (+)
G19366 NA non-coding upstream 1286159 51565289 ~ 51571994 (+)
G19641 NA non-coding downstream 70041 52933764 ~ 52935403 (+)
G19660 NA non-coding downstream 143437 53007160 ~ 53007531 (+)
G19664 NA non-coding downstream 160902 53024625 ~ 53024934 (+)
G19675 NA non-coding downstream 375383 53239106 ~ 53283206 (+)
G19674 NA non-coding downstream 413158 53276881 ~ 53320938 (+)
AMCG00017287 NA other upstream 24111 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 40784 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2294875 50559450 ~ 50563278 (+)
G19113 NA other upstream 2305168 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3130586 49713467 ~ 49727567 (+)
G19683 NA other downstream 472186 53335909 ~ 53339655 (+)
G19754 NA other downstream 639709 53503432 ~ 53536464 (+)
G19829 NA other downstream 926824 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 930903 53794626 ~ 53805796 (+)
G19854 NA other downstream 990184 53853907 ~ 53855839 (+)

Expression


Co-expression Network