G19674


Basic Information

Item Value
gene id G19674
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53276881 ~ 53320938 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24404
ACCCAAACCCGCTGCCTGCCGCCATCCCACCCCCATCCAAAGGAAACCCCTGCTTGTCATGGTGACAGGATTCCGGTTTCCCATGCTGTTCGGAGGCATCCAATACCATAAAGCCCCACCTTCCGGCCTCGGTCACAACCCCTTTCCACGGGCGGGGCGCTCATCTGGACATCTTCATCTGGAGACTCTCTTTGCCATTGtgaccaaacaaaaacaacaacgacCAACAAGAGAGACAACAGCAACAACCGCCCCCATCAGCACCGCTTAAACATGTTTCAAACATGAGAAAGACGGATGCTCCCTTGTACACCTCCTGCCTCGGCCTCCGTATCCATCTATCCATCGCTTCATCTTTCTCCATTGATCCTCGACGGGGCCGGACAGGCAGAGACGAGGGCAGCCGTGGCCATTCGCATTCCTCAAGAGGACCTTTCCCAGAATTCCTCCGGGACGTCCCTCTCAGTGTGTCCGATAGGAGTCTCTGTTCCATTCAGTCACgtatacaagaaaacaaaaacaaaaaattagcaaaaaaaagcaacaagatttcaaaaagaaaaagaaaaagaaacctctTCCACTTGTAGGATATGATTTGAACAGAAGTTGTACGATTTTACTGACTTAACGAGCATCTCTCCATGCACTATACCTACTAATTGCCAAAATGAGATAGATTTTCATGtggtcttatttttttatagccaAAATagtgagaggaagagagatCATATAAATAAAAGCGTAAATaactgcatacatacatacattcatgcatcgataaataaatacaacagcgCTTCAAGCAGTAGCGAAGGAGCGCCGTGTGATGACATCATCAGTGTGGGCCGTCTGTAGTCCTTCCCATGTCTCCCTCAGTGTCCCTGTGAGGAAATCTAggtgttttaatgaaaactgttCCAGTGCCGACACACCTTGAACGGTAGTTGTCAATCTCTGTGgcaaaatcatgtttaaatTCTAAATTATTGCCAGGACGTTCATCGCTCTGCATTtaggggagtgggggggggtgtatttatTCTCACGGAGGAAAAACAAGGGAGGAGGCGATCATCGGGAGCCTAGCTGACTTTATTTGTTCTATTTCGATCGAGGTGGGTGTgcttatttaataattaaaagaaacattgatCGATCGAGGTGGCTGTGTTTAACAGGACATgtaatagttaaaataaacgTTGAGCCAGTTTAGCACAGTGGCCCGTGCTTTGGGAATGGGGTTCAGAGTCATGGGCCAAATGCCACCGTGTCCTCTGCAACGGTGTGAATTTTTACCAGGCGAACGGAAACTCATCCCCCGGAGGTTAGTCTGAACAAAACGAGCCTTCTGCGTCCTCGCTCTGCGCCCCCCCAGCTGACATAATGCGCAACAGGCATCCCAGTGAAAGCATCGCTGTTCACCTAACAATGCTAGATAGATGTTTGAAAGCCATTGTAATGTCCCCCAGATCAATATAGCAATTAGATCAACTTTTTTCCGTCAGATCCCGCTCAGTAGCTCCTTGGTGCCCGAACACTGTTGGACCAGCCCTGGTTTGGAATGAATTTTCTTctcgtacacacacacacacacacacacacacacacacacagagacggacACAAAGtcctctccctgtgtctctcttcATCCCTCCGAGTGTCGAAGCCGGCCTGTGTAAATACTGAGAACAGACCATCGTAACCAGGAGGACTGTTGGACTAGCGCTCGCGGACCAGCGCTCTCAGCTCCTGCGTCGTGTCCGCCTTGCTGTCTGTGGCCTTCAGAAAGGGGATTCCCCTGACGAGGAATCCGGGAGACCCTCCGTCTGGGGTCTCtcaaccaccccccacccccatcctgTCGGCCGGTGTTCGCCGAGAGGAGGCAGCGTCGGACCAGACGGCTGCCAAGACGGCGACACGTGCCGACGCGACGAGACACTTGTAGCAAAGAGACGGAGCTGAGTCGACTCCTGTGAGAAACACAAGGGTGTTCAAAAAGAGCGTTGATGTTAAGTGTGAATACTGGGGACTATGAACCGTGTGAGTATAGTGtaagcttcttttttttaaccgcAGGAGAAACTGTCCCTGAATCCAGCTGTATTGTCAAatgttgaaattgaaattgtgcttttacaaactgtgtcttttctttttctttatttatgtatttactcaatcttttatttttctgaaagtgtGTAAAGATCCTTCATGGGGTGAAATCGTAGGAGGCACCGCATTGGGGCCGAATTTTTTTTGGCAGTATTTATGTTTACTTTACCTCAAGGAAATCTGGGTGATCTCTTGGACTGGTGTTCACGCCATGTCTGAAAATGCTTCAAAATTGTTTACTGTAGTTCCTGTATCCAAGGTGGTTatgatgtctgtgtgtttgattttgagttttttaCTCCAAAGGCACTGAAATGATACACAAACACGTGGTGTGCGTTACAGACTTCAAAGTTATGAAGAGGGTTGATCAGGAATAGTTCGATTGGGAATCCACAGATGtatttctgtgaaataaaagtagttttttGACCTTCAGAGAGGAGGACAGACACGGAGAGAGGGCCCATGAAAGCTCGATCAGAGAAGAGGGCACAGTCCACACAATGTCTGTTGGCCAAATCAGTGACAAAGCCGCACCCCTGGCTGCTATTGGGTGAAAGTATTTTGCTCCTTCCTATCAGTGTTCCCGGAGCTGGACCTTCGATCCCGGAGTCTCGGTCCTGTCTCTTCCAGATCAGCTCTCGGTGACAACACATGGAACACACAACCCACCAGACTCAATCTTTTTCTCTAATGTTTTTCATCTCCaaattttttttatgaatccGAATAATTTAAATAGCTTGAAACCTCCCAATGGTAGTAGAGCAGACATCGATGAATACAAGGTTGAGCCCGAGCAGACAGCCGTGGAGTCTGGAGGGTCGAATTCGAGggtcctgacacacacacccaaacgCACACACCTTTATCCTGTGCACCCCCGCCCCCTCACCGTTCAGCACCTGTCCCCTCCCAGACCCGTCTCTCGGTCCCACAGGGGGGTGTGGAAAATGGCTTGTTCTCTGCTTGGCATGAGTCCTGCATCCTCTTCTTTCAGCTCCGAACTGTGATGCCAAGTgtgtgttttcctctgtgtcTTCCGGGCTCGAGGCTCCGCTCGGTGTTCTGAATTCATCACTCCTTCAGCAGGAGAGTCGTGGTGCCGCAGCCACAGAGATGACAGGGTGATCGTTCGGTGCAAGTGGAGATCGAGGTTCAGGAGAAGGGGGCAGGCTTTTGTTTCGCAGGACAGACGTCTTGCCTGGGACAATCGTAGGGAATGTTATGGTAACCCCCCGCTCCATCTTGTCACTGTAAAtagttactttattttatttcaggcaGGTCTTTGTTTTCAGACAGCCTGGGGGGGTGGAGATAGCGTTGCTTCCTCTCCTTGTTCTCTGAGGTTGAGAGGCGTTAATCAGACATCACCCCACTTGCGTTTTAATTTCTGCCTTTCGTGTAGCGCGGTGATGGGGCCACCACGGGGGGTCGATGGCCCCTCACTCTTTGGGGTGAAAGCACATTTCTTCAGGGCCCGTTAGACTATGCACAACCCCCTCTCCCCCGCCCCCCAGCCGTGATCTTAATGCACAACCCCCCCCAGGTCAACACCTCAATGCACAACTTCCCTCTCACTCTAAGACGTCCACTGAGGAACGGTCTGGCTGTCTGTGTCCAGTCGCAGTCCTGATGTGTTTAAACGCTGTGGAAATCGAGTGTTGGGatcttgttgtgttgtgttgagaTTCCCGCACTCTGAGGGGACAGGGGGTCTGAGTCACGGTTGTGTTCACAGTCTTCACCGATGGCCAGGTCAACCATCCTTCATACTTTCTCATTGAGGACAGTGTGAGCGTGTGACTTGTGATTGGTATATTGCTGGAGGTTAGTTATGCTGGTGAAGATCGTGAGGAACTGGCCGGGTCTGAGGGATACAAACTGCTCCTTCAACACAAAACAGTCACAGAGTCGGTCCAAAACCTCTTAACAGCGCAGGGGGaaagttttcttcttcttcccaaGTTTTCAAACTAGATCAGGGCCTTGTTCACGAAGTTCATCCAATTATTCTGTCAATTGGAGATGTTTAATagattgtcttttttctttggttCTGTTTAAGATGGTTTAGGCTGTGCGCTTAATTAAGGTTCAGTGAGGCCTATGGAGAGAAGTGTAATACATatccattaaatacatatatataaatcatatcaTTATATACATGATTCATGTAGAAATAGACTCCATGACTAGGTAATTTAACAGGGTCCCTCTGGGGTGGGTGGTCTCTGCAACGCCCCCTCAGAGACCCTGACCTGCTCAACTCCAGATTAGAGATACGAACCTCTTTTGCCAAAAGCCCGTCCCGTGATGCGGGTGTTGAAAGCCCAACTGCAGTCCATGGGCGTTACTCTCTCTCCAGACCGCCAGCCATGAAGTCAGGAACAAGACGAGAGCAAACCCCACAATCTCCGGGTTTCCGCTCGCCCCTGTCCCCTCGCGTGCCAGTCTCGGCCCATTGGCCCCAACTCCCTGCGCCTCGCGGTCGCGGCACGGGGATCCGGTGTCTCTTGTAGTTGTCTAAGTGCCAGAGGTTGAAGCCAAGGATGTGTTTCACTTTGTGTTGCTGGCGTTTCAGACATGCAGCCCAGCGTCCTCCAGAGCCGAGGCACCGCCGGGAACAGAAACCCGAGACCCTCTGCCTCGAGGGGCTGGggttatacatatatgtatgtatatatgtagatctatatacatatatgtgtgtgtgtgaatgtatgtatctatgcatACACATTCATCCTTAACCTCCTGAGATTCGAGGAGCCGTCAGTGTTTTCTGTCctgagtggggggtgggggcacagGTGTGTCtgtcccttttttcttttggtttttcTTTTGCCAAAACATTTTGGCCCAACTAGAGGGGCCCTTCTGCAGCCCCCCGGCCGCTCATTCTCCTTCGCCGTATCTGTGTCGGTGCGTGTTATGGGAAAGCCTGCGACAGGGGCAGAGTGTGTCTGTGATTCTGTAGTCTGTAGTCTGGTGCTCTGTGATGCTGTTTGACAAATGTGTAAACAaatgaaatcataataattacataaataaatgaaaacgaattaagtgaagaaataaaaaatattattaatgaagTACAACTGATAATCATTTCAAGTTTCGATCTGAAATCAAgcgaacattttgttttattgctgctgGTGACGATGTTTGCGAGGAGGTTCGGCGCGTCTTGTCTGAGAAGCTTTGTCCGTGTCGCTCCATTCTTTTGtacagatgggaaaaaaaagatgaaaaaaaggcaaaatttgtaaaatattgtgtcTGTGACTccttgtaaaatattttcaaattgtttattaCAGAGAATCAGTTATTAaataatgttcatatttttcacgtcaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24404 True 5519 lncRNA 0.48 2 53276881 53320938

Neighbor

gene id symbol gene type direction distance location
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding upstream 1864 53254667 ~ 53275017 (+)
AMCG00017289 acy1,LOC105933287 coding upstream 324926 52936900 ~ 52951955 (+)
AMCG00017290 NA coding upstream 343193 52930490 ~ 52933688 (+)
AMCG00017288 NA coding upstream 354484 52918052 ~ 52922397 (+)
AMCG00017279 NA coding upstream 516377 52757463 ~ 52760504 (+)
AMCG00017300 NA coding downstream 35643 53356581 ~ 53363297 (+)
AMCG00017303 NA coding downstream 53946 53374884 ~ 53380042 (+)
AMCG00017307 NA coding downstream 59957 53380895 ~ 53387713 (+)
AMCG00017308 NA coding downstream 67446 53388384 ~ 53392592 (+)
AMCG00017304 NA coding downstream 77917 53398855 ~ 53408838 (+)
G19664 NA non-coding upstream 251947 53024625 ~ 53024934 (+)
G19660 NA non-coding upstream 269350 53007160 ~ 53007531 (+)
G19641 NA non-coding upstream 341478 52933764 ~ 52935403 (+)
G19617 NA non-coding upstream 413158 52858153 ~ 52863723 (+)
G19591 NA non-coding upstream 422159 52850931 ~ 52854722 (+)
G19729 NA non-coding downstream 88027 53408965 ~ 53409300 (+)
G19751 NA non-coding downstream 131192 53452130 ~ 53533874 (+)
G19789 NA non-coding downstream 351046 53671984 ~ 53673814 (+)
G19836 NA non-coding downstream 492847 53813785 ~ 53813987 (+)
G19838 NA non-coding downstream 494907 53815845 ~ 53816076 (+)
AMCG00017287 NA other upstream 442839 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 459512 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2713603 50559450 ~ 50563278 (+)
G19113 NA other upstream 2723896 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3549314 49713467 ~ 49727567 (+)
G19683 NA other downstream 14971 53335909 ~ 53339655 (+)
G19754 NA other downstream 182494 53503432 ~ 53536464 (+)
G19829 NA other downstream 469609 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 473688 53794626 ~ 53805796 (+)
G19854 NA other downstream 532969 53853907 ~ 53855839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G113022 NA non-coding NC_035909.1 CM008312.1 22662581 ~ 22666345 (-)