G19751


Basic Information

Item Value
gene id G19751
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53452130 ~ 53533874 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24503
gtgtgtgagtgtgtgtgagagtgtgtgagagagtgtgtaggtgtgtgagtgtgtgtgtgtgtgtgttgaggctGTGGGCGGCAGAAGGCAGGATGGCTGTGAAGTTGCAGGTGTCAGGAGCGTGACCGCACACTTCAGGATCGCGTCTCCCTTGTGGAGTGGAGCCCCCTGTGTGCCGGAGGGCAGGAGGGACAGCACTGCCGTTTGTCTCCCCGGCCCCCGGGAGGCGGATTATGATTTTTAAGGAGTTGCATTTTGGCGACACCAGGACTTTGCCAGGATTGTGGGTTCGGGCTGGCTCGGTTCTGTTTGAAAGACGGGTCTGACTGTAGGTCTCTCGGTGCAGCGCGGCCTGTCAGCACAGCCGGGGTGTATAAACCGCTAGGGGTTCGGGTAGCCTGGGTGAGGGCCAGGACTGGGGGTTCACGGTGATTAAAGGTCGAAGGTCAAAGTTCA
>TU24505
gtgtgtgtgtgagtgtgtgtgtgtgtttgtgtgtgtgggtgtgtgagtgtgtgtgtgcgtgtgtgagagagtgtgtgggtgtgagagtgtgtgggtgtgtgagtgcgtgtgtgggtgtgtgagagtgtgtgtgtgtgtgtgagtgtgtgagagagtgtgtaggtgtgtgagtgtgtgtgtgtgtgtgttgaggctGTGGGCGGCAGAAGGCAGGATGGCTGTGAAGTTGCAGGTGTCAGGAGCGTGACCGCACACTTCAGGATCGCGTCTCCCTTGTGGAGTGGAGCCCCCTGTGTGCCGGAGGGCAGGAGGGACAGCACTGCCGTTTGTCTCCCCGGCCCCCGGGAGGCGGATTATGATTTTTAAGGAGTTGCATTTTGGCGACACCAGGACTTTGCCAGGATTGTGGGTTCGGGCTGGCTCGGTTCTGTTTGAAAGACGGGTCTGACTGTAGGTCTCTCGGTGCAGCGCGGCCTGTCAGCACAGCCGGGGTGTATAAACCGCTAGGGGTTCGGGTAGCCTGGGTGAGGGCCAGGACTGGGGGTTCACGGTGATTAAAGGTCGAAGGTCAAAGTTCACGGGGTGCACTGTAATCTTTGAGTCACTGTGGAGGAGTGTGGTGTAaattaacacaataataaataaaactgaaaaaactgaG
>TU24506
tgtgtgtgtgtgagtgtgtgtgggtgtgtgagtgtgtgtgtgcgtgtgtgagagagtgtgtgggtgtgagagtgtgtgggtgtgtgagtgcgtgtgtgggtgtgtgagagtgtgtgtgtgtgtgtgagagtgtgtgagagagtgtgtaggtgtgtgagtgtgtgtgtgtgtgtgttgaggctGTGGGCGGCAGAAGGCAGGATGGCTGTGAAGTTGCAGGTGTCAGGAGCGTGACCGCACACTTCAGGATCGCGTCTCCCTTGTGGAGTGGAGCCCCCTGTGTGCCGGAGGGCAGGAGGGACAGCACTGCCGTTTGTCTCCCCGGCCCCCGGGAGGCGGATTATGATTTTTAAGGAGTTGCATTTTGGCGACACCAGGACTTTGCCAGGATTGTGGGTTCGGGCTGGCTCGGTTCTGTTTGAAAGACGGGTCTGACTGTAGGTCTCTCGGTGCAGCGCGGCCTGTCAGCACAGCCGGGGTGTATAAACCGCTAGGGGTTCGGGTAGCCTGGGTGAGGGCCAGGACTGGGGGTTCACGGTGATTAAAGGTCGAAGGTCAAAGTTCA
>TU24508
tgtgtgtgtgtgagtgtgtgtgggtgtgtgagtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgagagtgtgtgagagagtgtgtaggtgtgtgagtgtgtgtgtgtgtgtgttgaggctGTGGGCGGCAGAAGGCAGGATGGCTGTGAAGTTGCAGGTGTCAGGAGCGTGACCGCACACTTCAGGATCGCGTCTCCCTTGTGGAGTGGAGCCCCCTGTGTGCCGGAGGGCAGGAGGGACAGCACTGCCGTTTGTCTCCCCGGCCCCCGGGAGGCGGATTATGATTTTTAAGGAGTTGCATTTTGGCGACACCAGGACTTTGCCAGGATTGTGGGTTCGGGCTGGCTCGGTTCTGTTTGAAAGACGGGTCTGACTGTAGGTCTCTCGGTGCAGCGCGGCCTGTCAGCACAGCCGGGGTGTATAAACCGCTAGGGGTTCGGGTAGCCTGGGTGAGGGCCAGGACTGGGGGTTCACGGTGATTAAAGGTCGAAGGTCAAAGTTCACGGGGTGCACTGTAATCTTTGAGTCACTGTGGAGGAGTGTGGTGTAaattaacacaataataaataaaactgaaaaaactgaG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24503 False 456 lncRNA 0.59 3 53452130 53533874
TU24505 True 661 lncRNA 0.55 3 53452264 53527622
TU24506 False 565 lncRNA 0.58 3 53526749 53533874
TU24508 False 590 lncRNA 0.55 3 53526749 53527622

Neighbor

gene id symbol gene type direction distance location
AMCG00017305 NA coding upstream 23069 53419540 ~ 53429061 (+)
AMCG00017306 NA coding upstream 32996 53409380 ~ 53419134 (+)
AMCG00017304 NA coding upstream 43292 53398855 ~ 53408838 (+)
AMCG00017308 NA coding upstream 59538 53388384 ~ 53392592 (+)
AMCG00017307 NA coding upstream 64417 53380895 ~ 53387713 (+)
AMCG00017314 NA coding downstream 125624 53659498 ~ 53669772 (+)
AMCG00017319 LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863 coding downstream 141004 53674878 ~ 53689906 (+)
AMCG00017323 NA coding downstream 188660 53722534 ~ 53734975 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding downstream 283398 53817272 ~ 53821473 (+)
AMCG00017326 celsr3,LOC106566780 coding downstream 296997 53830871 ~ 53834907 (+)
G19729 NA non-coding upstream 42830 53408965 ~ 53409300 (+)
G19679 NA non-coding upstream 116746 53306095 ~ 53335384 (+)
G19674 NA non-coding upstream 131192 53276881 ~ 53320938 (+)
G19675 NA non-coding upstream 168924 53239106 ~ 53283206 (+)
G19664 NA non-coding upstream 427196 53024625 ~ 53024934 (+)
G19789 NA non-coding downstream 138110 53671984 ~ 53673814 (+)
G19836 NA non-coding downstream 279911 53813785 ~ 53813987 (+)
G19838 NA non-coding downstream 281971 53815845 ~ 53816076 (+)
G19889 NA non-coding downstream 378944 53912818 ~ 53914877 (+)
G19899 NA non-coding downstream 414884 53948758 ~ 54041033 (+)
G19683 NA other upstream 112475 53335909 ~ 53339655 (+)
AMCG00017287 NA other upstream 618088 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 634761 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2888852 50559450 ~ 50563278 (+)
G19113 NA other upstream 2899145 50551880 ~ 50552985 (+)
G19829 NA other downstream 256673 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 260752 53794626 ~ 53805796 (+)
G19854 NA other downstream 320033 53853907 ~ 53855839 (+)
G19860 NA other downstream 330234 53864108 ~ 53864718 (+)
AMCG00017331 NA other downstream 381251 53915125 ~ 53936482 (+)

Expression


Co-expression Network