G19958


Basic Information

Item Value
gene id G19958
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54056860 ~ 54057920 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24771
AAGTGAAACGCTGACAAGCGAGTGAAGCTTCTCGGCTGCTCTTTATTGTGGCGACAGTTCTCCGCGTCTCCAGGCAACGCGGCTCGCTCGTTCACACTGTGACTGATGTACAGGTAAGAGGACAGCATGTGACACAGGGAGGGGACACAGCGAGCAGCGACACAGGGACTGTCCAGTCACTACGACCCCCTCATCctctatatgtatatagaaCTTAAAATCAGTAGTGCTTCAGTACCTGGAATTATTTACGTACATAtgattttaagtttaattaagcTAATTTGTTCCATTCAATAAACGACACCTGggcagtgccccccacccctctctcctgAAAGGATGAAACAGCAGCAGCGTCctcaacacaaaatacatgagACATGAAGGAAGTCAATTGATATCTTGAAGGAGAGCTTGGGACTGGGGCTGCAAACTGGCACAGGGTGGACAGCGGATTCAGACCAGGGTGTGACGGTTTGACACGGGTACAAAACCTGAGGatggacagagggacagaccaACAGacggatggacagacagacatacagagggACAGACTGACAGTTTCTATGGCtacacttttaacatttttaaaattacataaacatGGCGAGAATACGATTACATGAAGCACATTTCTTGTGCAGCAGAATCGGCCAtctggagaccctgctggactggactgtgtctctcaggaccagggccgagaccctgctggactggactgtctcTCAGCAGGACCTCTGTCCCAGTGCACAAATCCACTCTGCAGCTGGACAGCTTATTCCATGAATTCATCACTTTATGTGCAAAAAAAttgtaacaataaaacaaataaacagtgctCTCCCAGATCAGTGCAGAATCTCCAAAATGCCCCCCCTCTTGGAACATCCCCCTGAAGTGAGCAGCCATGGGGGGGCAGCcctgactgcagtgtgtgtgataTGCTCTGAAAAGTCAATAACCTGAAATGTGTTGGTTTTCAGTAACTACCCACCCCCCCCACGACCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24771 True 1019 lncRNA 0.49 2 54056860 54057920

Neighbor

gene id symbol gene type direction distance location
AMCG00017336 NA coding upstream 195 54036514 ~ 54056665 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding upstream 23823 54013561 ~ 54033037 (+)
AMCG00017324 NA coding upstream 173356 53876586 ~ 53883504 (+)
AMCG00017326 celsr3,LOC106566780 coding upstream 221953 53830871 ~ 53834907 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding upstream 235387 53817272 ~ 53821473 (+)
AMCG00017340 NA coding downstream 95687 54153607 ~ 54170510 (+)
AMCG00017347 NA coding downstream 147212 54205132 ~ 54208721 (+)
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding downstream 267416 54325336 ~ 54335011 (+)
AMCG00017354 NA coding downstream 278020 54335940 ~ 54343047 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding downstream 294786 54352706 ~ 54357989 (+)
G19899 NA non-coding upstream 15827 53948758 ~ 54041033 (+)
G19887 NA non-coding upstream 95022 53959463 ~ 53961838 (+)
G19889 NA non-coding upstream 141983 53912818 ~ 53914877 (+)
G19838 NA non-coding upstream 240784 53815845 ~ 53816076 (+)
G19836 NA non-coding upstream 242873 53813785 ~ 53813987 (+)
G20006 NA non-coding downstream 113295 54171215 ~ 54171423 (+)
G20028 NA non-coding downstream 285482 54343402 ~ 54345777 (+)
G20086 NA non-coding downstream 494220 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 557321 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 675100 54733020 ~ 54737869 (+)
G19956 NA other upstream 1685 54054800 ~ 54055175 (+)
G19896 NA other upstream 109242 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 120378 53915125 ~ 53936482 (+)
G19860 NA other upstream 192142 53864108 ~ 53864718 (+)
G19854 NA other upstream 201021 53853907 ~ 53855839 (+)
G19961 NA other downstream 6438 54064358 ~ 54066187 (+)
G20013 NA other downstream 249875 54307795 ~ 54392591 (+)
AMCG00017357 NA other downstream 365633 54423553 ~ 54452054 (+)
G20099 NA other downstream 469832 54527752 ~ 54529204 (+)
G20085 NA other downstream 515554 54573474 ~ 54582399 (+)

Expression


Co-expression Network