AMCG00017497


Basic Information

Item Value
gene id AMCG00017497
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7668024 ~ 7679350 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017497
CTGTGATGTCCAGTGGCTCCGGGCTTTGACCCTGCACTCACCCCTCACAGGTCCGGCACCGCATTACCGGTCAGGTGATGGTGCTGAAGATGAACAAGGTGGCCAGCAACAGGGCCAACATGCTGAGGGAGGTGCAGCTGATGAACAGGCTGTCGCATCCCAACATCCTGAGgttcCTCGGAGTGTGTGTCCATGAGGGCCAGCTCCACGCCCTCACTGAGTACATTAATGGGGGCAATCTGGAGCAGCTGCTGGACAGTGATGTGTACCTGTCCTGGGCCGTGAGGGAGGGCCTGTCGCTGGACATCGCCCGGGGGCTGCAGTACCTACACGGCAAGGGCATCTTCCACAGGGACCTCACCTCCAAGaacTGTCTGGTTCGCTGTGACAGCGGCCACTTCACTGCTGTGGTGGGAGACTTCGGGCTGGCAGAGAAAATCCCTGTGTACAGTGAAGGGGTGGAGAAACAGCCCCTGTCTGTGGTGGGCTCCCCCTACTGGATGGCTCCGGAAGTCCTGAGAGGAGAGCTGTACAATGAGAAGGCGGACATCTTCGCCTTTGGGATTATCCTGTGCGAGACCATCGCACGCATCCAGGCTGACCCGGACTTCCTCCCCCGCACAGAGGATTTTGGACTGGATGTGGAATCATTCCAGCACATGGTGGGAGACTGCCCACCTTCTTTCCTGCAGCTGGCAGTCAACTGCTGTGATATGAATGCAGACCGGCGTCCCTCATTCTCAGAGATTGTTGCGGAGCTGGAGAcgagggagggagcgagggagagcGTGGGTGAGGAGATCAATCTGGCAGCGGTGAAGGATGGTATCCCTGTTGGACCCCTGTTGGCCCCTGGCTCCAGCCCTGTTCGGCGACGCTCTCTGTGCTTGCCCTGGGACCGAGGGCTGTCCCGTAGCCAGTCTGACATGCTGCCGCCTGCGATACCACCCCTGCTCTCCGGCACACCTGCCCGGGTCAACCCCTTCTCCCAGCGGCAGGACCTCAACGGCGGCAAGATCAAGCTGTTCGACACGCCCAGCAAGTCTGTCATTTCGTTGACCTTCGCCCTTCCCCAACCACCCGACTCCTGCACTGGCTCCTCCCCCACACCCCCTGACCCCTGGCGGGATTCCAGAGGGACCCCTCGTCGCTGCCGCTCGCTGCCCTGCACCCCTGAACTGCCCCGCCCTACCCGGCCCACCTTGGCCCCCTCCGAGGAGCAGGTTGCTCTGGCCCAGCACAGGCAGGGGCAGCTGAGGGTCAGTGAGCCACAGGACAGAGGCATCGATGTGGTGGCGTACAGGTTGGGCGGAGGGCAGATGCCTGACCCTGAGCGGTGGGGCGAGCCGGTCATGAGGCAGCCTGCAGGGAGGATGGAGAAGGTGGGGGAGAGTAGGGGGTCGACGCTGGACTCGGAGACACCCGTGGACCTGGAGTTGGTGTCTCTGGAGATGCTGACTGAGGGAGATCTGGAGACTCTTTGTCTGGGGGAGCCCATGGACTGCTCCAGCAGCCCGGACACCTTGGAGGGCTCGGTGTTCCTGGAGGGACCCCAACCGAACCAGTCCTGCCTCAGCCCTCCCTCGCCCTCTGTGCTGGCCAATGGCTGGAACTCTCCAGTTTCCAATGGCCCGCCCTTGCTGCCCCCGCTGTCCCCGCTCGATAACAACAACACGGCCGTGGTGGTCAGCCACcccttggggtgggggggcaacGGTTATCACGGGAACTCTGCGAGTCCCTCGTTCCCGCTGCACGGATCCAGCACAGCCACCCTGGAGCAGGACGAGGTCATTTCCTGTCCGGGCTGCTGTCTGGCGGGTCTCCGCTTCCCAACAGCTTGCTTGCGACCCCGCAGGAACCCCCCCCCCTATAAGAACCTGAATGGAGAGGCGCGGCGCAGCCTGCTCTGTGGGAACACAAAGACCCTCCCGGCCGCCCCACGCCTACCTGGGCACAGTGCCGAGCCCAGCCTGCCCCTCCCGGAGGCACAGACATAGGGAGGATGTCCTCATCCTTCGATGTGGCTCCAGTTCCTGTCAGCACTGTCTCTGTATagatatttttcatattgttaaTTATATCTGTTATTGCTGATGTTTGCTCAGGGGTGTTGAGGAGTTTGCTGCCTCCtccactcttttttttttttttcccccaggcTCTGGGCAACAATGGCAGGGGCAGTTTCTATAGTGAACAGAATGATAGACCAATATGGGGAGAAAGTGAGTGGCCAGCAGCCTGTGGGGGTGCTCTTGGGTTTGCTGGGTTATTACACCTAGAGTCTGTGAAGAGGGCCCTACTTTTCTAGCCCTATACACCCTTCTGATTGCCGGAACCACTCTCTCCTCTGTGGCTTGCTCtcaggttgttttgtttgcgTTTCTTGGAGTTGCACTGAACGAGCCTGAAGGGGAGGGTAGTGGCACTGCGGTGTGCAGTCGGTGTGAAGCGGTGGCAGTCGCCGTCTGAAAAGGAGTGGTTGGGAAGGAGGAGCTACTCGGGGTCATTCGGGAGGTTGCATTTCTCTTTGTTGCATTGCATTGCGtgctggtttgtgttttaatggaccgcgtgtgcgtgtgcgtgtgcgtgtgcgtcgcCTGCCCGGACTGAGCCCAGGGTAACATTCCACACACCTCCCCAGCACTCTGCAGTATCGACACTTGCTAGCGGTGGGGAGCTCGAGTGTTTGGTGGGATGGGAGGAGAGTGAGAGGGACGGAGAGGTTGACCTAACCGTCCCATCAGCCCCTCTCGCAGAGTTCCAGTCACAATCTGCCTCAACCTGCCTCCCATCTCTATCTCCTGGAGTCGCACATACAGAGTGGAGTACCTCCTTAGTTTCAGATCTACTGATTTACCCCTGTGACCCTGTTGCACACAGCATGAGTATTACAAACTACGGTTTAGAAGTGTGAACAGCCAGTGTGACGGGAGAGAAATTGCACGGGGGCGAAACATGATTtgttgtctctgtgttttgtacAGATCACATTGTTCTCCGCACCACACTGTCCGTGCAAACACTCCCCAGGCAGGCCGTGCTGTCTGAGAAATCCCAGCACTGCGCAGCTCTCAATCTGCACATGACGCTGTGGGGGACAATGGGGGGGTTGCTGTAGGGCggggattcattttttttctatgtacTTTACAAGAGGCAATGAATTTAAATggtatattttttcttacaagAGTTTGTATTCTACACTGACTGCTGTACAGAGTTTTTGCTTGAAACCCCCGAATTCCCTGATTTTTAGCTTATTTATTCCCCGGGGGTACTGGAGGGTCCTGGGAGAGAGAGCTGGTCTGGGGACTTCGTGTCCGCCCATGGTCTAGTTATCGGGTCAGTATTGACAACTTATTTTCCACTACAACACCCCTTTCTTTAAGAAAACTCTGAAGCCATTCCTGATTTTTGTAGAATTCCGAGGAGCCTCAGTTCAGATGCACCTCTGTGAAGATGTCTGGTTTTTCACAGCCCCGTTGTTTTTCATTCTGGACAGGAAATATCTGGTGTGAACTTGTGGTGGGATAATGTTCCATGATTCTGACCCTTAGCCTCTGAGTACCCAGGGCCCTCCTTCACCCTCACATGAAGCACTTATCATTGGAAACCATGAACAGCTTTAATAAATCGGGTCAgataaaatcttaatttaaagaataaataaaaaaaaaatatatatggatagTAAATCTTGTGTGGAGTGCTGTCATTCGAAGATGCCACAGTCTCTTACTTGCACTTTGCTCTGATTATGCAGCACATAGAGTATTTCCTACTAAAGCCAGCTTCGGCGACCTCTCGTTGCAATAGGAATCAGgctttgtaaaatgtgtaatttagtCAATGTAGTCGTAGATTCATCCACTAAAGACCTCTGGCTCAGCTGAGTGGTGCATGATCATAATAGATAGTGAATAGTTCCATCACGGTGCAAGCTTAAGGTGAGACTGATTGCAGGAAAGGGCCAGACTGGTTTCACCTGCACTCTTCTACACTCCACTTAGGATAAAGTACTGTTTGCAGGCCATTCTCCTTTCAACCTCTTCCCATTATCTAGTTCAGTGGTGTCCACGCCTATACCTGGAGAGCCACACAGTCTCCTGGTTTTCCTTGTAGTTGATGAGTGCAAGTTCTTGTGTTTTCCAAGCCTCCAATCAGATTCTAGTTCCCATTAAACCTCCAGGACTATGGCTCTCCAGGTCTAAGGCTCGAGATCTCTGCTCTATCTTCTCTCTCATGTGCCGTTCCAAAGATCTGCCTGTAAGATCCCATTCGTTCTTCAAACGAAAGTGTACGGCAAAGATGAGGTGCTCTAAACGCATCCAGCTTAACGTTCAGATCATCGTATATAAACCTCTCCATATTACTTCTGGTCAGCATGCATAAACTATAAAGCTGCTTCTTTAATAAGTGAAAGTTTattgattgaaaatgtatgaatgattaaaaacaaatttcaaaagcaaaccaaaaacaaataaacatgcaacCGTCTGACCTGATTCTTGAGTTATTCAAACATGCATAAACCTGGGGTacaataagtgtttttttatggttGAGATTGATCTACTGGAGGACTTCTGCCTTGGAATTGCTCTTCATATCTGATTCGACAATTGCAAAAATGTTCTCCATTTGCA
>TU113391
CTGATGTTTGCTCAGGGGTGTTGAGGAGTTTGCTGCCTCCtccactcttttttttttttttcccccaggcTCTGGGCAACAATGGCAGGGGCAGTTTCTATAGTGAACAGAATGATAGACCAATATGGGGAGAAAGTGAGTGGCCAGCAGCCTGTGGGGGTGCTCTTGGGTTTGCTGGGTTATTACACCTAGAGTCTGTGAAGAGGGCCCTACTTTTCTAGCCCTATACACCCTTCTGATTGCCGGAACCACTCTCTCCTCTGTGGCTTGCTCtcaggttgttttgtttgcgTTTCTTGGAGTTGCACTGAACGAGCCTGAAGGGGAGGGTAGTGGCACTGCGGTGTGCAGTCGGTGTGAAGCGGTGGCAGTCGCCGTCTGAAAAGGAGTGGTTGGGAAGGAGGAGCTACTCGGGGTCATTCGGGAGGTTGCATTTCTCTTTGTTGCATTGCATTGCGtgctggtttgtgttttaatggaccgcgtgtgcgtgtgcgtgtgcgtgtgcgtcgcCTGCCCGGACTGAGCCCAGGGTAACATTCCACACACCTCCCCAGCACTCTGCAGTATCGACACTTGCTAGCGGTGGGGAGCTCGAGTGTTTGGTGGGATGGGAGGAGAGTGAGAGGGACGGAGAGGTTGACCTAACCGTCCCATCAGCCCCTCTCGCAGAGTTCCAGTCACAATCTGCCTCAACCTGCCTCCCATCTCTATCTCCTGGAGTCGCACATACAGAGTGGAGTACCTCCTTAGTTTCAGATCTACTGATTTACCCCTGTGACCCTGTTGCACACAGCATGAGTATTACAAACTACGGTTTAGAAGTGTGAACAGCCAGTGTGACGGGAGAGAAATTGCACGGGGGCGAAACATGATTtgttgtctctgtgttttgtacAGATCACATTGTTCTCCGCACCACACTGTCCGTGCAAACACTCCCCAGGCAGGCCGTGCTGTCTGAGAAATCCCAGCACTGCGCAGCTCTCAATCTGCACATGACGCTGTGGGGGACAATGGGGGGGTTGCTGTAGGGCggggattcattttttttctatgtacTTTACAAGAGGCAATGAATTTAAATggtatattttttcttacaagAGTTTGTATTCTACACTGACTGCTGTACAGAGTTTTTGCTTGAAACCCCCGAATTCCCTGATTTTTAGCTTATTTATTCCCCGGGGGTACTGGAGGGTCCTGGGAGAGAGAGCTGGTCTGGGGACTTCGTGTCCGCCCATGGTCTAGTTATCGGGTCAGTATTGACAACTTATTTTCCACTACAACACCCCTTTCTTTAAGAAAACTCTGAAGCCATTCCTGATTTTTGTAGAATTCCGAGGAGCCTCAGTTCAGATGCACCTCTGTGAAGATGTCTGGTTTTTCACAGCCCCGTTGTTTTTCATTCTGGACAGGAAATATCTGGTGTGAACTTGTGGTGGGATAATGTTCCATGATTCTGACCCTTAGCCTCTGAGTACCCAGGGCCCTCCTTCACCCTCACATGAAGCACTTATCATTGGAAACCATGAACAGCTTTAATAAATCGGGTCAgataaaatcttaatttaaagaataaataaaaaaaaaatatatatggatagTAAATCTTGTGTGGAGTGCTGTCATTCGAAGATGCCACAGTCTCTTACTTGCACTTTGCTCTGATTATGCAGCACATAGAGTATTTCCTACTAAAGCCAGCTTCGGCGACCTCTCGTTGCAATAGGAATCAGgctttgtaaaatgtgtaatttagtCAATGTAGTCGTAGATTCATCCACTAAAGACCTCTGGCTCAGCTGAGTGGTGCATGATCATAATAGATAGTGAATAGTTCCATCACGGTGCAAGCTTAAGGTGAGACTGATTGCAGGAAAGGGCCAGACTGGTTTCACCTGCACTCTTCTACACTCCACTTAGGATAAAGTACTGTTTGCAGGCCATTCTCCTTTCAACCTCTTCCCATTATCTAGTTCAGTGGTGTCCACGCCTATACCTGGAGAGCCACACAGTCTCCTGGTTTTCCTTGTAGTTGATGAGTGCAAGTTCTTGTGTTTTCCAAGCCTCCAATCAGATTCTAGTTCCCATTAAACCTCCAGGACTATGGCTCTCCAGGTCTAAGGCTCGAGATCTCTGCTCTATCTTCTCTCTCATGTGCCGTTCCAAAGATCTGCCTGTAAGATCCCATTCGTTCTTCAAACGAAAGTGTACGGCAAAGATGAGGTGCTCTAAACGCATCCAGCTTAACGTTCAGATCATCGTATATAAACCTCTCCATATTACTTCTGGTCAGCATGCATAAACTATAAAGCTGCTTCTTTAATAAGTGAAAGTTTattgattgaaaatgtatgaatgattaaaaacaaatttcaaaagcaaaccaaaaacaaataaacatgc

Function

GO: NA

KEGG:

id description
K08841 TESK1; testis-specific kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017497 True 4661 mRNA 0.53 9 7668024 7679350
TU113391 False 2412 lncRNA 0.47 1 7668180 7670591

Neighbor

gene id symbol gene type direction distance location
AMCG00017502 NA coding downstream 6191 7660846 ~ 7661833 (-)
AMCG00017501 NA coding downstream 7362 7658067 ~ 7660662 (-)
AMCG00017498 NA coding downstream 17916 7647646 ~ 7650108 (-)
AMCG00017500 gba2,LOC104958191,LOC104958190 coding downstream 28764 7625571 ~ 7639260 (-)
AMCG00017499 NA coding downstream 73942 7587951 ~ 7594082 (-)
AMCG00017504 NA coding upstream 76307 7755657 ~ 7776355 (-)
AMCG00017505 usp46,LOC106533691 coding upstream 101702 7781052 ~ 7793599 (-)
AMCG00017507 NA coding upstream 164296 7843646 ~ 7851221 (-)
AMCG00017506 NA coding upstream 310443 7989793 ~ 7991440 (-)
AMCG00017513 NA coding upstream 344306 8023656 ~ 8042454 (-)
G90817 NA non-coding downstream 343917 7323730 ~ 7324107 (-)
G90805 NA non-coding downstream 385547 7266067 ~ 7282477 (-)
G90796 NA non-coding downstream 441181 7221828 ~ 7226843 (-)
G90783 NA non-coding downstream 462163 7205620 ~ 7205861 (-)
G90762 NA non-coding downstream 543850 7065885 ~ 7124174 (-)
G90885 NA non-coding upstream 14233 7693583 ~ 7694005 (-)
G90908 NA non-coding upstream 93868 7773218 ~ 7784195 (-)
G90938 NA non-coding upstream 149148 7828498 ~ 7830609 (-)
G90948 NA non-coding upstream 335045 8014395 ~ 8023105 (-)
G90956 NA non-coding upstream 453045 8132395 ~ 8132854 (-)
G90746 NA other downstream 479376 6733235 ~ 7188648 (-)
G90749 NA other downstream 554843 7112436 ~ 7113181 (-)
G90715 fat4,LOC106611628,LOC106604622 other downstream 1278986 6387252 ~ 6389038 (-)
G90502 NA other downstream 2444977 5222473 ~ 5223047 (-)
G90501 NA other downstream 2447003 5158384 ~ 5221021 (-)
G90937 NA other upstream 151535 7830885 ~ 7832592 (-)
G90939 LOC105903575 other upstream 312787 7992137 ~ 7996595 (-)
AMCG00017520 NA other upstream 794140 8473490 ~ 8514955 (-)
AMCG00017531 NA other upstream 1053410 8732760 ~ 8748743 (-)
G91119 NA other upstream 1075938 8755288 ~ 8755907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033697 TESK1 coding NC_007118.7 CM002891.2 24528414 ~ 24572034 (+)
grasscarp (Ctenopharyngodon idella) CI01000049_06880930_06892990 NA coding CI01000049 null 6880664 ~ 6893438 (-)