AMCG00017582


Basic Information

Item Value
gene id AMCG00017582
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12307781 ~ 12322370 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017582
ATGATGTGGTCTCTGAGCCAACTATGCTTTACAGCAAAGCCTTCGCAGGAGAGGAAGATGGAGCTCAACAAGGCCGAGAAGGCCTGGAAACCTACAATTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAAGTGAACGAGCTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGTGTCTTCTGAGGTTCAAAGTCCCGGCTGCTGACAAGCTGGGAGAGATGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGGCGAGGAGCGGCAGCGTCTATGTGACGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGTGGCGCACGATAGGCAACATCAGGTTCATTGGGGAGCTATTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACTGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAGAGAGAGGAAGACCTCCCCTCGAATCCGCTTCTTGCTGCAGGATGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGTGCACTGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGTCACGTGTCGGTCGGGCCAGAGCAGAGCGggccagagcagagcaggcCAGGAAGAGAGTGACTTTTGCGAAAGTACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGA
>TU114186
ATGAGATTCAGCTCAACAAGGCCGAGAAGGCCTGGAAACCTACAATTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAAGTGAACGAGCTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGT

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017582 True 1065 mRNA 0.55 7 12307781 12322370
TU114186 False 282 lncRNA 0.55 2 12311036 12311604

Neighbor

gene id symbol gene type direction distance location
AMCG00017579 bod1l1 coding downstream 210512 12092470 ~ 12097269 (-)
AMCG00017565 NA coding downstream 334097 11955414 ~ 11973684 (-)
AMCG00017568 cpeb2 coding downstream 369248 11933251 ~ 11938533 (-)
AMCG00017567 LOC108240206 coding downstream 400387 11904838 ~ 11907394 (-)
AMCG00017574 NA coding downstream 456167 11843481 ~ 11851614 (-)
AMCG00017587 drd5 coding upstream 342161 12664531 ~ 12665835 (-)
AMCG00017589 otop1,LOC106583410 coding upstream 348738 12671108 ~ 12677683 (-)
AMCG00017591 NA coding upstream 360056 12682426 ~ 12688515 (-)
AMCG00017588 NA coding upstream 382088 12704458 ~ 12710164 (-)
AMCG00017590 NA coding upstream 407661 12730031 ~ 12739099 (-)
G91467 NA non-coding downstream 473883 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 478088 11828008 ~ 11829693 (-)
G91381 NA non-coding downstream 910050 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 1016547 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 1019618 11287855 ~ 11288163 (-)
G91539 NA non-coding upstream 19072 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 173921 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 184257 12506627 ~ 12509143 (-)
G91562 wdr1,LOC106565198 non-coding upstream 194710 12517080 ~ 12521214 (-)
G91576 NA non-coding upstream 333699 12656069 ~ 12656333 (-)
AMCG00017569 NA other downstream 407181 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 800961 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1810677 10361300 ~ 10497104 (-)
G91119 NA other downstream 3551874 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 3559038 8732760 ~ 8748743 (-)
AMCG00017631 NA other upstream 2110788 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2437698 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3544577 15866947 ~ 15867647 (-)
G92129 NA other upstream 3708032 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 5065114 17387484 ~ 17395049 (-)

Expression


Co-expression Network