AMCG00017589 (otop1,LOC106583410)


Basic Information

Item Value
gene id AMCG00017589
gene name otop1,LOC106583410
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12671108 ~ 12677683 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017589
ATGGGGGAACACGGCTTGGATATTATGTTCCTCAACAAGAACTGTCACAGTTCTCCAGGATCCTTCACGAACAAAGACAAGAAGAAATTCAGGaacattaaaatcagtttcACAGATGACTACCCCCAGAAAAATGCTGATATCTTAAGTGGCCAATATGGGATCAATTTGCTCCTGGTCGGGGTGGCGTTGATGTTGTCTTTGTCGTACACCGAGACCTCTGTGAAGGAAGAGCACCTGTTGTCTTTTCTCATCTCCCTGATGATCCTGCAGCTCATGTGGATGCTGTGGTATATGATTAAAAAAGACAGCGAGAGGGGCTTAGTGTCGGAGAAGGATGTCCACGCCGGGGCAAGCTGGTTAAGAggtGGACTAACCGTGCttgctttaatttcattaattatGGATGCTTTCCGGATTGGATATTTTGTTGGGTATCAAAGTTGTTTGTCAGCAACACTGGGGGTTTACCCAGCAATTCacgctgttcatacaatatcaCAGGTACATTTCCTTTGGTTTCATATCAAGGATGTGATCAAGACATTTGAGACCTTTGAAAGGTTTGGAGTACTTCACGCAGTCTTCACTAATCTACTTTTGTGGTGTAATGGAGTGATGACAGAagctaaacattttttaaatacacataaaagaAGACTAACATCCATTGGATTTGTGAATGGAACAGTGGAGGTTGGTGAGCCTAACTGCAACTGCACCACAAATGCCTGCACCATGTTCTACAACGTCCTGAACTACCTTTACCCGTTCAACATTGAGTATCACATCTTTGTTTCGGTCATGCTGTTCGTCATGTGGAAGAACATCGGACGAACTATTGACTACCAACGACATCACAAAAGTGTAATAAGTACAACGGGCCTCGTCATTGGCCCAATTCTTGGACTAATTGCGTTTGCCAGTACAATAGCTATACTTGCTttatatacaatacacattGAAGATTCTGTACAAACCAGGGAGTCCGCAATatctatgttttattattatgggaTTGTCATACTGGCTTTTATGTGTGCAGCTGGGAGTTCTGGCCTACTAATCTTCAGAACTGATAACTTACCTCTGGACTACTCTAAGAACCCATCCCGAAAGCTAGACACTGACTTGCTCTTCGGCTCTTCCATTGGTGCGTGGCTCATGTCCTGGTGCACTATCATTGCGGTGATATCTGCCAAGCGGAATCCAAAATACAGATGGACAAACTTAATGCTCCCAGAGGTTTCCATTTCGCCACCAAAGAGAAATGCAGCAAAACTGAATAAGAGGAGAATGGCCCTAAGGAATATCGCTGTCTTCCTGTTCCTGTGCAACATTTCACTTTGGATCTTACCAGCATTTGGCTGTCGTCCGCAGTATGATAATGGATTGGAAGAAGACACCTTTGGCTTCACAGCATGGACCACAATCCTCAACTTTGCCATGCCCTTGAATCTTTTTTACCGCATGCATTCAGTTGCTTCACTTTTTGAAGTGTTCAAAAAAGTTTGA

Function

symbol description
otop1 Enables cholesterol binding activity; identical protein binding activity; and proton channel activity. Involved in proton transmembrane transport. Acts upstream of or within otolith formation and otolith mineralization. Is integral component of membrane. Is expressed in lateral line system; otic vesicle; vestibuloauditory system; and yolk syncytial layer. Orthologous to human OTOP1 (otopetrin 1).

NR:

description
PREDICTED: otopetrin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017589 True 1515 mRNA 0.43 7 12671108 12677683

Neighbor

gene id symbol gene type direction distance location
AMCG00017587 drd5 coding downstream 5273 12664531 ~ 12665835 (-)
AMCG00017579 bod1l1 coding downstream 573839 12092470 ~ 12097269 (-)
AMCG00017565 NA coding downstream 697424 11955414 ~ 11973684 (-)
AMCG00017568 cpeb2 coding downstream 732575 11933251 ~ 11938533 (-)
AMCG00017567 LOC108240206 coding downstream 763714 11904838 ~ 11907394 (-)
AMCG00017591 NA coding upstream 4743 12682426 ~ 12688515 (-)
AMCG00017588 NA coding upstream 26775 12704458 ~ 12710164 (-)
AMCG00017590 NA coding upstream 52348 12730031 ~ 12739099 (-)
AMCG00017594 NA coding upstream 212509 12890192 ~ 12892560 (-)
AMCG00017598 NA coding upstream 284303 12961986 ~ 13061226 (-)
G91576 NA non-coding downstream 14775 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 149894 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 161965 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 171161 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 329373 12341442 ~ 12341735 (-)
G91850 NA non-coding upstream 1366438 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 2122407 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 2246710 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 2376780 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 2377609 15055292 ~ 15056623 (-)
AMCG00017582 NA other downstream 348738 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 770508 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 1164288 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 2174004 10361300 ~ 10497104 (-)
G91119 NA other downstream 3915201 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 1755475 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2082385 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3189264 15866947 ~ 15867647 (-)
G92129 NA other upstream 3352719 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 4709801 17387484 ~ 17395049 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location