AMCG00017647 (LOC108434806,LOC107737080,LOC105908469,LOC107712022)


Basic Information

Item Value
gene id AMCG00017647
gene name LOC108434806,LOC107737080,LOC105908469,LOC107712022
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15063427 ~ 15074519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017647
tgTAGCTCAAGGTTTTGGAATGCATTTTTCCCTACCTGTTTTTGGAACTGTaatctttttatcttttttttatcatgttgTCCATTTGAAAATTACCAAAATCTTAAATGCTTTTAGACTGCCAGAGGCATTCACTTGTTGAAAGTAGAGAGACCAGTCATTTTTGATTGATTAGTTTTCTTCTATTGAGATTTAAAACTAGAAATCTGCTGTGTTTACTAAGTATCATAATTGACATAGTTTGTGATAAAGCTGTGACATAAGGTGAACATGCTGCTATTGTATAAGTTGTTGTAAGTTAGACATAATgtacacattaaaatgtaataaggggcattaatctttattttttgtatttttgtactacCCATTTTGTCATTCAAGTCCCCTGGATGTGGCAAATGACATGCAAATCTGAAACCATGTTCATTTATCTACCAAAGGTGCAGATTGATAGCTTCACGTATGAAATGCATGCATACTTATTGTAATAAATGACAATGTACCTATGTTTAGTAATTTCAAGTTCTTTTAAGCACTAAATAAGTGAATAGTTTTACTcttttaatgaataatgaatgcaaATTTACTAAGCTTTTAACAACCAGAAATTCAAGTTCTGCAGTCTCCTGTGTGTGCTTCCCTGCAGTAGGACCACAATTACAGTGAAATTGAGTTATTTCTTGATTCTTGTAATCTAATGCATTTAGTTATGTttggaaaaagagaaaatactaACAGTGACATGTTACATATATTGCCAAGCTCACCAGTATATCTGTAAATAACCAGAACCCAGAAATAACTGTTCTGTTTCAGTCTTTCtagcatttgttttacatttcttagtctgctttttgaaatgtttgcatGGAGCAGCCAATATAACAGCCTTAGTCTATCAGAAAAAGATAAGCAAGGGATGCTGACTGCAGAGAGATGTCCATTGTTGTGGTCTACAGTGTTTTGTATGGGGATGCTGGTCTTTGATTCTGTTTAGCAAGCCCACACAAAGCTGCTATGTTGACCCGCTTACTGCTTGTTGCGTGCCGTAATGCGGCCCTGGAGACCCAGTTCAAACCGATGTAATCACTCGTTAATTGACACAAATGTAGAGCATTGTCATAACTTGAATAATGTTGTTTactacattaatattaattctgAGCACTCTGACAAAATAGAGTATGTTTCTAGTACTAGTTCTATAGCggactgttttcagttttaaaatccCACTACTTGGTTGTCTCCTTCGGCCTTTATCTTTTGTCGATGTAGTCTTGGTTGGAATTTGGTGCAAATGCTGGTTTCTTTTCCTCGTCAGAAATGGGGTAATAAAAGCATTGTATGGAGTTTCCTAAGCATCATCATTAACAACAACAGTTACTTAGTAGGTTAGTATCCTGAAAGCAGGTGAGTATGTGTATGAGATTAAATTAGCAGGCTCCAGCAGAGAAGTGGCTCATGGTGTAGAAGAGGCCATGTTAGAGTGAACTCCTGCCCTGGGCACTTCAGTAGGCATGGGCCTGTTAGTACAGTGACTCAGAATTCCTAGGGGGCCATCACTTAATCGTCCTGTTCTTTTCAGTGCCCAGTTCTTAACACgccttgttaaaaatgtttggaCTCCACTGCTTCTCTTTTAAGATCTTTTGATCAGATTTCCGTTTTCGGGTTTTGAAAGTCTTTTATGCGTTTCCACCCAACAGGAGAAAACAAGTCTTACATATTTGTCCTCCTTGGTTTGTACAGCAGAAGGGCATTCAGATCTGATGTATGTTAAAATTAGCAGTGTAGGTAAAATAAGTATTGTAAGACTTCCTACCTTGTAAAAGCTGAATTCTCAGTGTTTCCATCAGCAATTATCACTATCACTCCCCTGATAAGGCATTGTATTTCCTCTAATTGTTGTAATCACTTCGGCACTACATTTTAGTTAATTGCATTGAGGGTATGGTAACTGATTGGTTgattgtatactgtattgttGCCGTATCTCTTTGTACAATATATGTATCAAAGCAGTTCCTAGCTGTTCAGCAGTTGTTCTATGATGTGTGAGTTAGGTCTTACCCTTACTATGTTTGCCTTTAGAGACTTGTGTTTTTAGGGATTGTTTTTTGACAGGAAGCACAAGCAACTGCCACTCGCTCATGGTTTGATCAGCACACTAGTCTGCAGCCAGATGTTTTGCATGTTCCTTTCCAAACTAGGGTTTAATCATGATCAATTCAAGCTGGCAGAGATGTAAATGTCCATCAAACTAACCAAGCCACCTTAAATATTTCTGTGTTCAAGACCAGAGCAGGAATTAATATGGCCAGTACTCTGCAAAGGGCTGTgatgtgtttctctgtctcaaTTGAGCCTTGTGTGTCTCAGACGTCTCCAGATAAAGTGGACTACGAGTACAGCGAGCTGCTGCTGTATCAAAACCAAGTCCTGCGAGAAGCTGGTCTTTACAAAGAAGCCCTCGAACACCTCACCACTTACGAGAAGCAGATCTGTGACAAGCTGGCGGTGGAGGAGACAAAAGGGGAGCTGCTAGTGAACCTAGACAGAATGGATGAGGCGACAGAAGTGTATACCAGACTACAGGAGCGTAATCCTGAGAATTGGTCTTATTACCATGGCCTGGAGAAGGCCCTTAAGCCTGccagtgtagaagaaaaacagaaaatctatGAAGAGGCCTGGGTGAAATATCCTAAGGGGCTGGTGCCTAGGAGACTGCCTTTAAACTTTTTATCGGGTGAGAAATTTAGGGAATGTTTGGATAAATATTTAAGAATGAACTTCAGCAAAGGATGTCCTCCAGTTTTTACAACGTTGAGGTCCCTGTACCATGATAAAGAGAAGGTGGCAATAATAGAAGATCTAGTAGTTGGCTATGAAACATCATTAAATGGCTGCAGAATGTTCAATCAGAATGATGATGGGAAAGAGGAGCCCCCCACCACTTTGCTGTGGGTTCAGTACTTCCTAGCCCAGCATTATGATCAGATTGGCCAACAGACCTTGGCATTAGATTATATTAATGCTGGTATTGAAAGTACACCGACTCTCATAGAGCTCTTCCTCATCAAAGCCAAAATATATAAGCATGCGGGCAACATCAAGGAGGCAGCACGGTGGATGGACGAGGCCCAAGCGCTGGACACTGCCGATCGCTTCATCAACTCCAAGTGCGCCAAGTACATGCTCAAGGCCAACATGGTGAAGGAGGCCGAGGAGATGTGCTCCAAGTTTACAAGGGAAGGTGCCTCAGCTGTGGAGAACCTCAACGAGATGCAGTGCATGTGGTTCCAGACAGAATGTGCGCTTGCTTACAAGTCCATGAACAAATATGGGGAAGCTCTCAAGAAGTGCCATGAAATTGAAAGAcattttgtgGAGATAACAGATGATCAGTTTGACTTCCACACGTACTGCATGAGGAAGATGACGCTGCGGTCATATGTGGACCTGCTGAAGCTGGAGGACGTCCTGCGAATGCACCCTTTCTACTTCAAGGCAGCCAAGACGGCCATTGAGATTTACCTCACCCTGCATGACAACCCACTGACTGACGAGAACAAGGAGCTGGAGGCCGACACTGAGCTGAAGAAACTGAGGAACAAGCAGCGGCGAGCGCAGAAGAAGGcgcagctggaggaggagaagaagaacgCAGAGAAGGAGAAGCAGCTCAAGaaccagaagaagaagaaggaggatgATGACGAGGAGATCGGGGGACCCAAGGAAGAGCTCATACCAGAGAAGCTGGCCAAGGTAGAAAATCCACTGGAAGAAGCAGTTAAATTCTTGACTCCTTTGAAAAActtagtgaaaaataaaatagagacTCACCTCCTGGCATTTGAAATATACTTTAGAAAAGAAAAGTTCTTGCTGATGTTGCAGTCAGTGAAGAGGGCCTTTACTATTGATCCTGATCACCCCTGGCTCCACCAGTGTCTAGTTCGCTTTTTCAAAGCAGTGTTGGAGAGCAAAGACTTGCCAGAGGCAGTGCGCACGGTCCTCAAGCAGGAAATCAAAAGGTTATTTGGGGACAGCAATGCCAAGAGTTTCAATGAAACCTTCCTCAGCAAGCACTCCAACTCCATCCCACACCGAGTAGCAGCTGCCAAAATGATGTACTATCTAGACTCTTCCACTGAGAAGAAGGCTGTAGAACTGGCGACTGCACTGGACGAGTCCCTGGACAATAGGACCATTCAGatctgcacagaggTGGTGGAAAGCTTGCGCTGCGGCAGCCTGGGAGACAACAAGGACATGGCGGAGGTGTACAGAGCAAACTGTCACAGGATCTTTCCCTACACACTGGCATTCATGCCACCAGGCTACGAGGAGAACATGAAGATCACGGTGAACGGAGACGTCTCGGCTGAGCCGGAGGAACTGGCCAACGACATGTGAGACGGAGGGACGGACTCTAGTAGCCCACCACCATTACTGAACACCACCGCCAAGGTTTTTGTCATGCACCTGCAGTACTGCGTCAAAGTTTATATTGAGATAAGGACTAAATGATGTAATTgtattgaggggaaaaaaaactaaaagaagaggagagaaaaaaaatggccattttacttttttttttttttttttttt

Function

NR:

description
PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017647 True 4626 mRNA 0.42 15 15063427 15074519

Neighbor

gene id symbol gene type direction distance location
AMCG00017645 rab33b,LOC102236194,LOC106911658,LOC101473034,LOC100689790,LOC102313972 coding downstream 10764 15043670 ~ 15052663 (-)
AMCG00017646 NA coding downstream 50659 15003446 ~ 15012768 (-)
AMCG00017639 grk4 coding downstream 387352 14664881 ~ 14676075 (-)
AMCG00017632 htt coding downstream 405939 14614561 ~ 14657488 (-)
AMCG00017634 NA coding downstream 450832 14608910 ~ 14612595 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding upstream 1304 15075823 ~ 15080306 (-)
AMCG00017660 tada2b coding upstream 138978 15213497 ~ 15213745 (-)
AMCG00017659 NA coding upstream 148983 15223502 ~ 15234769 (-)
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding upstream 1711149 16785668 ~ 16797841 (-)
AMCG00017664 NA coding upstream 2350892 17425411 ~ 17462601 (-)
G92051 NA non-coding downstream 6281 15056943 ~ 15057146 (-)
G92050 NA non-coding downstream 6804 15055292 ~ 15056623 (-)
G92049 NA non-coding downstream 8743 15054463 ~ 15054684 (-)
G92024 NA non-coding downstream 137467 14924393 ~ 14925960 (-)
G92006 NA non-coding downstream 263026 14800090 ~ 14800401 (-)
G92067 NA non-coding upstream 70016 15144535 ~ 15144735 (-)
G92069 NA non-coding upstream 87799 15162318 ~ 15162712 (-)
G92093 NA non-coding upstream 410738 15485257 ~ 15485762 (-)
G92132 LOC104962440 non-coding upstream 1060861 16135380 ~ 16135707 (-)
G92134 NA non-coding upstream 1092120 16166639 ~ 16182063 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 298595 14760068 ~ 14764832 (-)
AMCG00017631 NA other downstream 578609 14433158 ~ 14484818 (-)
AMCG00017582 NA other downstream 2741057 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 3162827 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 3556607 11504024 ~ 11506820 (-)
G92124 LOC101154678 other upstream 792428 15866947 ~ 15867647 (-)
G92129 NA other upstream 955883 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 2312965 17387484 ~ 17395049 (-)
AMCG00017665 NA other upstream 2394086 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 2707129 17781648 ~ 17789749 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location