AMCG00017687 (zgc:136929,LOC107742495,LOC107665264)


Basic Information

Item Value
gene id AMCG00017687
gene name zgc:136929,LOC107742495,LOC107665264
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18232408 ~ 18268748 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017687
ATGGGAGGCATTCGACCTCCCATCATGAACGGGCCCATGCACCCGCGCCCGCTGGTGGCCCTGCTGGACGGCCGGGACTGCACCGTGGAAATGCCCATCCTCAAAGACGTGGCAACTGTGGCCTTCTGCGATGCACAGTCCACACAGGAGATCCATGAAAAGGTACTGAATGAAGCAGTGGGGGCTTTAATGTATCACACCATCACATTAACACGGGAAGACTTGGAAAAATTCAAAGCACTTAGAATAATAGTCCGAATCGGCAGCGGGTTCGATAACATTGACATCAAGTCTGCTGGAGACTTAGGGATTGCGGTGTGTAACATGCCAGCCGCGTCAGTGGAGGAGACGGCCGACTCGACGATGTGCCACATCCTCAACCTGTACAGGCGGACCACCTGGCTGCACCAGGCCCTGAGAGAGGGCACACGGGTCCAGAGCGTGGAGCAGATCCGGGAGAAGCACAAGAGATTCAAAGAGCTTTCTGGGCGTGTTGGGCAGGCGGTGGCACTGAGAGCCAAAGCGTTCGGGTTTAATGTGATTTTCTACGACCCCTACCTCTCTGATGGGATTGAGAGGGCCCTGGGGCTCCAGAGAGTGAACACTTTGCAGGACCTGCTGTTTCACAGTGACTGTGTGACACTGCACTGCAGCCTGAATGAGCACAACCACCATCTAATTAATGACTTCACCATCAAACAGatGCGGCAGGGTGCCTTCCTGGTGAACACGGCCCGGGGGGGTCTAGTGGATGAGAAGGCCCTTGCTCAGGCTCTGAAGGAAGGGAGGATACGAGGGGCAGCTTTGGACGTTCATGAAACAGAGCCCTTCAGCCAAGGCCCGCTGAAAGATGCCCCAAACTTGATCTGTACCCCCCATGCAGCCTGGTACAGTGAGCAGGCCTCTATAGAAATGAGAGAAGAGGCGGCCAGAGAGATTCGCAGAGCTGTTACAGGTCGCATTCCAGACAGCCTGAAAAACTGTGTCAATAAAGACTATTTGACTCAAGCCACACACTGGGCCAGCATGGACCCTACAGTTGTACACCCAGAGCTCAATGGAGCATACAGGTACCCTCCTGGAGTTGTGAGTTTGGCCCCTGGGGGCCTCCCCCCAGCAGTCGAAGGAATCGTTCCCAGTGCGATGCCTTTATCACACGGCCTTCCTACCGTAGCCCACCCCCCACATGCCCCCTCCCCAGGCCAGGCAGGCAAGCCGGAAGCCGACAGAGAGCAGCACCCCAGTGACCAATTGTAG

Function

symbol description
zgc:136929 Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and transcription corepressor activity. Predicted to be located in nucleus. Orthologous to human CTBP1 (C-terminal binding protein 1).

NR:

description
PREDICTED: C-terminal-binding protein 1 isoform X3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K04496 CTBP; C-terminal binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017687 True 1257 mRNA 0.56 10 18232408 18268748

Neighbor

gene id symbol gene type direction distance location
AMCG00017686 NA coding downstream 43055 18181565 ~ 18189353 (-)
AMCG00017688 NA coding downstream 55397 18174151 ~ 18177011 (-)
AMCG00017684 NA coding downstream 290243 17928433 ~ 17942165 (-)
AMCG00017680 NA coding downstream 398591 17825058 ~ 17833817 (-)
AMCG00017676 NA coding downstream 497829 17721101 ~ 17734579 (-)
AMCG00017694 NA coding upstream 229381 18498129 ~ 18501874 (-)
AMCG00017695 NA coding upstream 458951 18727699 ~ 18737258 (-)
AMCG00017699 NA coding upstream 513982 18782730 ~ 18790340 (-)
AMCG00017698 NA coding upstream 532251 18800999 ~ 18807177 (-)
AMCG00017697 NA coding upstream 554652 18823400 ~ 18828559 (-)
G92401 NA non-coding downstream 127140 18104989 ~ 18105268 (-)
G92386 NA non-coding downstream 341338 17890342 ~ 17891070 (-)
G92375 NA non-coding downstream 376992 17853927 ~ 17855416 (-)
G92313 NA non-coding downstream 518226 17713903 ~ 17714182 (-)
G92200 NA non-coding downstream 979778 17252430 ~ 17252630 (-)
G92428 NA non-coding upstream 119057 18387805 ~ 18452812 (-)
G92434 NA non-coding upstream 190821 18459569 ~ 18459816 (-)
G92435 uvssa non-coding upstream 192620 18461368 ~ 18461702 (-)
G92440 NA non-coding upstream 213023 18481771 ~ 18482074 (-)
G92441 NA non-coding upstream 214725 18483473 ~ 18483792 (-)
AMCG00017675 NA other downstream 442659 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 744911 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 837359 17387484 ~ 17395049 (-)
G92129 NA other downstream 2201503 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 2364761 15866947 ~ 15867647 (-)
G92436 NA other upstream 194036 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1144239 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2033252 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5049345 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5995931 24264679 ~ 24270595 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_02988504_03010650 CTBP2A, CTBP2 coding CI01000310 null 2987917 ~ 3010689 (-)