AMCG00017731 (nfib,LOC106608626)


Basic Information

Item Value
gene id AMCG00017731
gene name nfib,LOC106608626
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20393877 ~ 20408258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017731
ATGAAGTATGGTGGCGCATGCTCCATGTGCCACCAGCAGGCTCTTGCTGAGAGCATGCTCCAAAAGCGGGAACAGTGTGGTATTACTGAATATGATGAGTTTCATCCGTTCATCGAGGCACTTCTTCCACACGTCCGTGCAATCGCCTATACGTGGTTTAACCTCCAAGCCCGAAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGGATGTCAAAGGATGAGGAGCGAGCGGTCAAGGATGAACTACTTGGTGAAAAGCCTGAGATCAAACAGAAGTGGGCATCCAGGCTGCTCGCCAAACTCCGCAAAGATATCCGCCAAGAGTACCGGGAGGATTTTGTGCTCAGTGTTACGGGGAAGAAGCATCCTTGCTGCGTGCTCTCCAACCCTGACCAGAAGGGAAAAATCCGGAGGATCGACTGCCTCAGGCAGGCCGACAAAGTCTGGCGCCTTGACCTGGTCATGGTCATTCTTTTCAAGGGCATCCCTTTGGAAAGTACGGATGGAGAGCGGCTCGTCAAATCCCCACATTGCACAAATCCAGCACTTTGTGTCCAGCCACATCACATAACAGTATCGGTCAAGGAGCTGGACTTGTTTCTTGCATACTATGTCCAGGACCAAGGCGAAACCAATGCTTTATTCCAGTCGCCcggccagccagccagccaaccAGCCAGCCAGCACATCATTGTCATAGCTCACTTATTTATCAGACAGCTGGGATCATGGAATCTGTCCAGAGAGGGCTCTGAAGCAGAGAAAGAGGCGGAATTCCTCAGTCTAGGATGGTGTCTTTCAGAGGCGAGCCGCGCAACACCAATGGGCATCCTTCATCGCTGGCCACATGAATGGCTGAGCAGGGAGGAGACAATTGGCATTGTTGCCAGGGAGACTGTGCCTTCTTTGCACCCCCTTCTGTTTCCCCACCAAACCCCTTTTATTCTGTCTGGGCAAGGATCACTGGGTGGAGTGATGATCGCCTTCTAG

Function

symbol description
nfib Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription regulator inhibitor activity. Involved in brain development; negative regulation of DNA binding activity; and regulation of transcription by RNA polymerase II. Located in fibrillar center and nucleoplasm.

NR:

description
PREDICTED: nuclear factor 1 B-type isoform X3

GO: NA

KEGG:

id description
K09169 NFIB; nuclear factor I/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017731 True 990 mRNA 0.52 3 20393877 20408258

Neighbor

gene id symbol gene type direction distance location
AMCG00017726 LOC102788851,LOC106608629 coding downstream 407262 19973418 ~ 19986615 (-)
AMCG00017727 ppp3ca coding downstream 439065 19948192 ~ 19954812 (-)
AMCG00017724 ddit4l coding downstream 503348 19888936 ~ 19890529 (-)
AMCG00017728 NA coding downstream 524420 19868999 ~ 19869457 (-)
AMCG00017720 NA coding downstream 583749 19696553 ~ 19810128 (-)
AMCG00017729 NA coding upstream 49957 20458215 ~ 20482752 (-)
AMCG00017736 tmod1,LOC102782831 coding upstream 90009 20498267 ~ 20514665 (-)
AMCG00017734 LOC103364796,LOC106608959 coding upstream 111960 20520218 ~ 20550836 (-)
AMCG00017738 NA coding upstream 145409 20553667 ~ 20571410 (-)
AMCG00017735 mtap coding upstream 163199 20571457 ~ 20584961 (-)
G92682 NA non-coding downstream 473725 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 526241 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 527460 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 776090 19613241 ~ 19617787 (-)
G92608 NA non-coding downstream 780695 19612705 ~ 19613182 (-)
G92714 NA non-coding upstream 7048 20415306 ~ 20415612 (-)
G92798 NA non-coding upstream 215885 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 226414 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 263807 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 268401 20676659 ~ 20734422 (-)
AMCG00017725 NA other downstream 35252 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 974521 19412987 ~ 19419356 (-)
G92436 NA other downstream 1930701 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2604128 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 2906380 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2909835 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3856421 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4537837 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4589286 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5536883 25945141 ~ 25957648 (-)

Expression


Co-expression Network