AMCG00017736 (tmod1,LOC102782831)


Basic Information

Item Value
gene id AMCG00017736
gene name tmod1,LOC102782831
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20498267 ~ 20514665 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017736
cCCGCCATGTCGTTTAAGAAGGAACTAGAGAAGTACCGGGATGTGGATGAGGATGAGATTCTGAAAAAGCTTTCAGAAGAGGAACTAAGGAGGTTGGAAGATGAACTGGAGGAGTTGGACCCAGATAACGCACTCCTGCCGGCAGGGATGAGACAGAAGGACCAGACCAAGAAGTCCCCTACTGGCCCATTCCAGCGAGACAGCCTGCTGGCACACCTGGAGAAGCAGGCCAAGGAGCACCCTGACAAGGAGGACCTGGTGCCTTACACGGGCGAGAAGAGAGGGAAGGCCTGGATCCCCAAGAAGACAGTGGACCCCATAATGGAGAATGTGACCCTGGaaccagagctggaggaggccctgGCCAATGCCAGCGATGCCGAGCTGTGCGATATTGCAGCCATCCTGGGTATGCACACGCTGATGAGCAACCAGCAGTACTACGAAGCTCTCGCTAGCAGCACCATAGTCAACAAGGAAGGCCTGAACAGTGTAATTCAGTCTACCCAGTACAAGCCAGTGCCAGATGAAGAGCCAAACTCCACTGATATCGAAGAAACGCTTGAGAAGATCAAGAACAATGATCCAGACCTATTGGAGGTGAACCTTAATAACATTAAGAACATTCCTGTGCCCACACTGAAGGCCTACGCAGAGGCTTTGAAAGACAACTCCTATGTTGAGAAGCTGAGCATCGCTTTGGCGGACATGTTGAAAGTGAATGCCACCCTGAAGTGTCTCAATGTTGAGTCCAACTTCATCACAGGAAATGGCATACTGGCTTTGGTGGAGGCCCTGCAGTTCAACACATCACTTGTAGAGCTGAAGATTGATAACCAGAGCCAGCAGCTGGGTAACAAGGTCGAGATGGAGATTGCCAGCATGCTGGAGAAGAACACCACGCTGCTGAAATTCGGATATCACTTCACGCAGCAGGGACCTCGTCTGCGCGGCTCCAACGCCATGATGAACAACAATGACTTGGTGCGAAAGAGGAGGCTTGAAGGCCTTGACGGGCCGATCTTCCCCAAGTGTCGGACGAGCGTGTAATGGCCCTGGAAGTGAAGGCCCGGCCTGGCAGCCCTCCACCGCCCCCCAGTGACTGCATTCTGCTATGGGTGTCCCCAGGAAGACCGAGCTCCACCGAGGGCTCCTGCTCTGTGTTGTACACTGTTTTTTGCAGTTTCAAAGATTGGATGTATTTGTTGGATGCAAGCTTTTGCATTCTGCTGTCTACCAAGGTGCTTCTCAGTCCTTTCCTCCTTACACATTTGtggcactttttattttttactgattGGTGTACTTTGCTTTAGCCTTCCTTTGATTCTGTTTCTTGACTAAACTCGGCCTGTTAATTGTGAGACAAGTTCAACTGAATAGCTCTTCAAAGCTTGCTTCGGCACTGATACGTTTTCCAGCACACTTGCTGGTGATGTTTTGAGAAGGAGCTTTTGACTAAATAATGACTTACCatggaaaacacaaatatataaatgcaacaagaaaaaaactacaaaatgcaGGTGTTGTATACTGCTCTCTAACATACATTCAGTACAACACCAATCCTCATTTCACTTTTATCCTCCTTTCTTTGCTAATGTCTGTCTCCCAACAACAcgtttatgttatttattaatcaagCGCAGGGATCCCTGTCTGAAATACCCTTTTTTCTAAACCTCCCAAAATTTAAGcactagttttatttttttatcaattatGAAGGAAAATACTGGAACTTGTTTTGCAATTAATGGATGTTACTGTttcaatattgttattattactctGATAGTTAAATCTAGCAGCTGTGGGTCCGATCTGTAAGATGGGGGAAAGTTCAGATGAACAAAGCCAAAGCAAAGGAACATAATTACACCatagattttgttattttttgtatttatacaatTTCAAACAATCTTGGTATCCTCAAACAGCCTACATTGTGAGAAGAGCTCCGTATCCAAAGCATATTCTGtggtttttaaatgattgatatAGTGCTATAGAGATTGACAGGTGGGTGTCTAGGGTGTACTCTGACCCATGCCCCGTGTCTGCCGGGTTAGTGACCGTGTACTGGATGAGGTgcttattgaaaatggatggatggatgattgTATAGTTTAAAGCTCATCTCCATAGCAGGCAATGTCACAGACCCCCAGACATTCGAAAGGGAAGACCAAAGGAATTCCTGTGCTGTAAGGGATAACAAACCATAGAGAACCTGAAATATTAAAGACGAcaaatattttagtgtttttgttgtggtttccaTCATGAATAGCTCAACCATGCCTGAATGGTCAGTTAGGCTTTCTGAGAGGATGTGAGAATTGTTTAAAGTTGTTTAAACAGAATTTGTATATGTGATCGGGAGGAGAGCTCTGCCCTTGatataagaaaaagaaaaaatacataatgcaacCATTTAGACATGACCAGGCTTATGGCAGGTTTATATTTCAGTGGTTGAAGAACCACTGAATCTGTAACTACTGtaaaactttgttttaaaacaaaacaacaactatagTTAACAGTGCCATATGAAACTGAAACAATCATCAATGGCCTCAAGGTGATGTGCATAAAACATTATCcagtttgttttcatacatGTGTACCGAATGGGAAATTTGTATGGTTCTTTCACAATGATTTATTTAGtcatgttaaatatttacacttttgCCTTTTACAAcaagaacatatatattttcccagCCCAAAGTTACTTATCCTACACCCATTTGtagattaaaaacatgttgtgtGATTATTATAAATGGTTTCtggcagaaatgtgtgtgtaggtgggg

Function

symbol description
tmod1 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Is expressed in muscle. Orthologous to human TMOD1 (tropomodulin 1).

NR:

description
PREDICTED: tropomodulin-1 isoform X2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017736 True 2834 mRNA 0.43 9 20498267 20514665

Neighbor

gene id symbol gene type direction distance location
AMCG00017729 NA coding downstream 15515 20458215 ~ 20482752 (-)
AMCG00017731 nfib,LOC106608626 coding downstream 90009 20393877 ~ 20408258 (-)
AMCG00017726 LOC102788851,LOC106608629 coding downstream 511652 19973418 ~ 19986615 (-)
AMCG00017727 ppp3ca coding downstream 543455 19948192 ~ 19954812 (-)
AMCG00017724 ddit4l coding downstream 607738 19888936 ~ 19890529 (-)
AMCG00017734 LOC103364796,LOC106608959 coding upstream 5553 20520218 ~ 20550836 (-)
AMCG00017738 NA coding upstream 39002 20553667 ~ 20571410 (-)
AMCG00017735 mtap coding upstream 56792 20571457 ~ 20584961 (-)
AMCG00017739 mtap,LOC107595051 coding upstream 80647 20595312 ~ 20601401 (-)
AMCG00017733 NA coding upstream 88690 20603355 ~ 20616229 (-)
G92714 NA non-coding downstream 82655 20415306 ~ 20415612 (-)
G92682 NA non-coding downstream 578115 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 630631 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 631850 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 880480 19613241 ~ 19617787 (-)
G92798 NA non-coding upstream 109478 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 120007 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 157400 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 161994 20676659 ~ 20734422 (-)
G92836 NA non-coding upstream 303010 20817675 ~ 20822960 (-)
AMCG00017725 NA other downstream 139642 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1078911 19412987 ~ 19419356 (-)
G92436 NA other downstream 2035091 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2708518 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3010770 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2803428 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3750014 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4431430 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4482879 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5430476 25945141 ~ 25957648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000161 tmod1 coding NC_007112.7 CM002885.2 12231478 ~ 12257979 (+)