AMCG00017752 (LOC107591574,LOC106602091,LOC107750449,LOC101068444)


Basic Information

Item Value
gene id AMCG00017752
gene name LOC107591574,LOC106602091,LOC107750449,LOC101068444
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20881493 ~ 20913956 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017752
GCCGGAGCTCCAGTAGCAGCAGGAGTGGCTGTCTGACTCGCCGCAAACATGGCTGCTCAGGATGAGCTCAATCAACTGGAGCGTGTTTTCCTTCGCTTGGGCCATGCAGAGACAGATGAGCAGTTGCAGCACATCATATCAAAATTCCTACCCCCAGTTCTTCTGAAGTTGTCTAGCACTCAAGAAGGTGTGAGGAAAAAGGTGATGGAGTTGCTGGTTCACTTGAACAAACGCATAAAAAGTCGGCCTAAGATCCAACTGCCAGTGGAGACCTTGCTGGTGCAGTACCAGGATCCAGCAGCTGCTTCCTTTGTGACAAATTTCACcatcatttacattaaaatgggaTACCCTCGTTTGGATGTAGAAAAGCAGTGTGAGCTGGCACCTACTTTGCTGACTGCTATGGAAGGAAAACCTCAGCCACAGCAAGATGGCCTAATGCATCTTCTGATCCCAACATTGTTCCACATGAAGTATCCTTCAGAGCCTTCAAAAGTTGCCTCTCCATTCATCCTTGTTGAGAAGCCAAAGACTGTTCACTTGCTGTTAGATTTCATGTTAGATGTACTGCTGATGCCTTATGgGTTTGTGCTGAATGAAACCCAGAGCCGCTCTGCCCCAGCCTCGCCTCAGGGTACGGCAGCCAGCGGGGGCACAGCAGGCCCTGGACTCCCACAGCCTCCTCCGGGCATGAGCTTCTACGCAGCCAAGCGTGTCATCGGAGAAACACCCTGGAGCCCCGAACAGTTGGAACAGTGTAAACTAGGAATAGTGAAGTTCATTGAAGCAGAGCAAGTTCCTGAAGTGGAGGCAGTGGTCCACTTAGTGATCGCTTCAAGTGACACTCGACACAGCGTGGCAACGGCGGCAGACCTGgaactgaaaagcaaacaaagcatAATTGACTGGAATAATCCCTCAATCATTAACAAGATGTATAAGGTGTACCTTGGGGATATTCCACTTAAAACAAAAGAGGGGGCTGCACTGAAACCAGAGCTGAAGAGGGAGCCAGTTAGCACACGGGTCAAACTGAAGATACTCCCTCACCTCCTCAGATCCCGGCTCGCTGCAGAGACGTTCCCTGCCAACATTCAGgttgTGTATGATGGTCTGTTTGgagcaaacacaaacaacaaactgAGATTGTTGTCCTTGCAGTTTGTTCAtcacatttgtgttgtGTGTCCAGATAATAACAAGCCCCTGGGTCTTATGCTTCTCAATGGATTAACAAAGCTTATCAATGAATACAAAGAGGAAGATTCTGAGGTCAGGCTGGCTATCCAGGAAGCTCTTTCCATGATGGTGGGGGCCTACGCATCCCTGCAGGGGGCCCTGCTCAATCTCATGGAAGCTCTTGTTGCTGCTTATATGGGAAAGCCTGAAGTGCAAGTTCGTCAAGTAGCGATGAAATTTGCGAGTACAGTGTTTGCTTCTGACCACGTACCCTCCAGATACCTCTTGCTGCTGGCTGCTGGAGATCCCCGTGAAGAAGTGCACAGTGAAGCCCAGCGTGTCCTGAGAGCCGTTCCTGCCCAGGGTACAGAGAAGGAAGGCTCTAAGCCCATGCCCTCCTTCCCAGACATGGTCAGCTACATTCAGGAAAAGGCTTCACAGAGAATGAAGACCCCTGCCAAGTACATTGTTGGAAATTCCACCCTTCCTTTTAACCCTTCTGCATTTGGAGAGATTATCTTGTACCTGCGGATGTGCCTTGCTCACAGTGCAGGAGCGATGCCTACCTCCCAGAGCCTGGCTGACATGCAGGATAACGCCCCAGCCATTGCGCGCTATGTGCAGAGTCTGCTGTGTGAAGAGcagctctcctcctcccccaagGGAGGGGAGTCCAACCCTGTGCAGGTTTATATTGAACTGCTCCAGCAGCTGCTGTCAGCCATTGGTGgcGTTCCAGTGATGTACTGCCTTTTAGAAgtggtgtctgtctgtccccaaAAGCTTGCACCTAAATTCATTGACAGAATTGACTGGATCAAGaGTCTGATGAACACTAACAAGGAAGACATGCGTGAGCTTGCAGCCCAGCTGTATGCGGTGGTTGTGTCGACCATGTCCGGGAATGAATTGAAGACAGCTGTGCAGAACCTCATCAAGATCACGAAGGACACCCATAACCCAGAGACGCAGCATGGAGCAATTTTGGCATTGGGTTACATGGTTGGCCGTTACCTGAGCAAAAGGAAAAGTTCAACAGACTCTCAAAACAAGGAACAGCCAATGAGCACAAACCTGCAGGAAGATGAAGAGCTGATCTGTTCTGCTACAAAAACTATTGGTTCGTTTCTGGAGAGCAGCTCTTCTCTCTTGACCATTGCTGCCTGTACAGCCCTGGGGGAGATCGGCAGGAACGGTGCTCTGCTGATCCCCAGTGAGGGCTCAGGCTTCACTAAACTGCACGTGGTCGAGAACCTGCTGGCTCGCATAACCTCAGGGAAAGAGAATTCAAAGATGAAGGAACGTGCCATACAGACACTGGGTTACTTCCCAGTCGGAGATGGAGAGTTTCCTCATCAGAAGAAACTGTTGCAAGGCCTGATGGACTCAGTGGAGGCTAAACAGGTGGAGCTGCAGTTCACCGTTGGGGAGGCCATAACCAGTGCTGCTCTGGGCACCAGCTCTGTCGCAGCACGAGACGCCTGGACCTGCAACGAAGAGGAGTACATTGCTCCCACTGATATGAAGTCCAATGATGTGGTGCCCTGGGTTCTGAACAGTATCCTCAGCAAACATATCAACAGCCCCAACCCCCATGTCCGCCAGGCCTCCTGCATCTGGCTGCTCTCCCTGGTGAAGAAGCTCAACCAGCACAAGGAGATCAAGtcgCACCTGAAAGAAATCCAGACTGCATTCATCTCCATCCTGTCTGATCCTGATGAGTTGAGCCAGGATGTGGCGTCCAAAGGCCTTGGGCTGGTGTATGAACTAGGCACTGAACAGGACCAACAGGAGCTGGTCTCCACACTGGTGGAGACGCTGATGACGGGGAAGAGGGTTAAACATGCTGTCTCAGAGGACACTGAGGTTTTCCAAGGTGGTTCCCTGGGCAAAACCCCTGATGGCCAAACCTTGTCTACCTACAAAGAGCTGTGTGCGCTGGCCAGTGACCTCAACCAACCGGACTTAGTCTACAAGTTTATGAACCTTGCCAATCATCATGCAATGTGGAACTCCAGAAAGGGTGCTGCCTTTGGATTCAACATGATAGCAGCTAAAGCTGGGGAGCAGCTGGCCCCTTACTTATCCCAGCTCGTTCCCCGTCTCTACCGCTATCAGTTTGATCCTAATCTTGGAATCCGACAAGCCATGACCAGCATTTGGGATGCTCTTGTTACAGACAAAACAGCGGTTGATAAATATCTGAAAGATATTCTTCAGGATGTTATATCCAACCTCACAAGTAATATGTGGAGAGTCCGGGAATCAAGCTGCTTGGCTCTTAATGATTTAATACGTGGAAGACAACTGGATGACATCATTGACCAACTCCCTGAAATCTGGGAGACCTTGTTCAGGGTGCGGGATGACATCAAGGAATCTGTCCGGAAGGCAGCTGATTTGACCCTGAAAACGCTTAGTAAGGTGTGTGTGCGGATGTGCGAGCCCTCCAGTGCCGCGGCGCAGCGGACAGTCGCGGTCCTCTTGCCCTGCCTGCTGGACAAGGGCATCCTGAGCAACGTGTCCGAGGTCCGAGCACTCAGTATTCAGACCCTGGTGAAGATCAGCAAGAGTGCCGGCTGCCGGTTGAAGCCCCACGCCCCCAGACTGATTCCGGCTCTGCTGGAGTCCCTCAGCGTGCTGGAGCCGCAGGTCTTGAACTATCTGAGTCTACGAGCCACTGAGCAAGAAAAGACCGCAATGGAAACCGCAAGACTCAGTGCAGCCAAGTCTTCTCCTATGATGGAAACCATTAACATGtGCCTGCAACACTTGGATGTGTCAGTCCTAGGAGAGCTCATCCCAAGGCTGTGTGACCTTCTGAAGAGTGGAGTTGGTCTGGGCACAAAGgGAGGTTGTGCCAGTGTCATTGTTTCACTGACCATCCAATGCCCTCAGGACTTGACACCTTATACAGGCAAGTTGATGAGTGCGTTGCTGAATGGGTTAAATGACCGCAGCAGTGTTGTACAGAAATCGTTCGCTTTTGCCCTGGGACATTTAGTCCGGACTGCAaaggacagcagtgtggagaagCTTCTGCAGAAGCTCAATGACTGGTACCTGGAAAAAGAAGAGCCGATTTATAAGTCTTCATGTGCACTGACGGTGCATGCCATTGGGCACTACAGTCCGGATGTGCTGAAGAGCCACGCCAGCCAAGCCTTGCCCCTGGCCTTCCTGGGAATGCACGAGGTTTCTGATGAAGAGAAGGGGGAGAACGCGGACTCCAACCTCTGGTCGGAGGTCTGGCAGGACCATGTGCCTGGAAGCTTCGGTGGCATCCGACTGTACATGACCGAGCTGATTGCCATCACCCAGAAAGCACTGCAGTCCCAGTCCTGGAAGATGAAAGCCCAGGGAGCGGCTGCCATGGCATCTATCGCCAAGCAGCAGACGGGCTCCCTGGTGGCTCCTTACCTGGGCATGGTGTTGAGTGCCCTGCTGCAAGGCCTGTCTGGGAGAACGTGGGCTGGGAAGGAGGAATTACTGAAGGCTATTGGAACTGTGGTATCTGCATGCAGTGGAGAGCTGAAGAAATCCGTGCCAGGCCAGCCCAGCATCCCCGAGATCATCGAGCTGGTGCTGAAAGAGTGCCGCAAAGACAACCTCGTGTACAAGATGGCGGCTCTGAAATGCTCTGCAGATGTCCTACACTCTGCCCAGGAGGACCGCTTCCAGGAGTTGGCAGACATTCTGATTCCTTTAATAAAAAAGAACTCCCCGACCAGTGCGCTTTCCCAGAAGgaaaaggaggaggaagacgaggAGGATGACATTGACGAGAAACGGAAGGAGTTGAAGACTGAGGCTTTGCTTTGTGCCTTTGAAACTCTTGGCAAGGCCTGGCCTAAAAACTCGGCAACACAGGAGCGGTACCAGTTGGAGCTGTGTCAGCTGATGTGTGAGAGACTGAAGCTCAGCACATGGAGGGTACAGCTTGGAGTTCTCCAGTCCATGAAGGCTTATTTCCAAGGGTTGATACTTTTGGAAAAGGACCAGCAAGATTCCCCTGCATTGACAGAAATATTGACAGAAAGTTGCACTGCAATCACATTTCCATTAGAAAACAAGAGCTATTCCTCTGTGAGGACTGAAGCCGTATCCATTGTGGAACTACTAATAAAGAGAGTGGATGAGAATGGACAGTGGGGAAGCTTGACCTCCAAGAGCAGAGATCAGCTGGTGAACTCCCTCACGCCCATGGGGTCGGACAGCAGACCGGAGCTGAGGGAGAGGGCTGCGGAGCTGCGGAAGCTGATCCAGAGGCACTCGTGAACTGGGATTCCATCATCCTTCCTTCTAGTCTTGACATGCAGATTCGCTTACTCTCCAAGACATGTGGCTGGCCAGTCTCCATTGCTACGTGCCCGATTTCAATGTTTTTGGGCTTTTTTCAGCTAAACTGCAGGCTCAAAAAGTTTTGCTATTAATATTTGATGTTCCCAtgtatgtaaaagaaaaaaaattaaatgctcaAGGCTGTTACCGTACGATGAATAAATGGCTTAGAATAGGAAGTTAATATTCCCTGGAACTTCCTACATCTGGAAccgttttaaaataaagctgtgtTTTTGCAGATGAGGGGTTAGCTTGTTAGAGATTTAGAAGGTGAGGTGGACTATGGGTAATGAGTGCAACCACAGCCACGTCAGTTGCAGTGTCATTTACAGAGTTCAATGTGGTATATTCAATGAAGTATAACAACTCAGTTACAGTATTTTATACTCTGCATCCCACTGCAATTAAATTGACCATACCtatgaaaataatttttaatcctatgataaaatgaaatgtttaattgtggATCTAATTGCCATATTTAATAGTTATTGCAccatgttcattttaaacactgtatTGTGCCCACAATGGGCCCATGTTGCTGCTGCAGTTTGCCACTTTAACTGCTTTACTGTAGTGGAGAATTGGAAAAGGCCAGCTTTTTGGAAAAGTGATTTGTTCAGGAAAGATTTTAGTGCAATGTCTCTTGATAAATGATACTACTCCACTTGCATGTTTTAAAGGTGTGTCtataattgaattttcaaaaCTAAAGTAACCATACCAAAGTTGGTAAATAGAAGAGGCATGCACTATCTTTTGAATTTCTTCTTGTGAATTTGTCCTAAACAAGATGTATGaataaaattgctttattgtgaacctata

Function

NR:

description
PREDICTED: proteasome-associated protein ECM29 homolog

GO: NA

KEGG:

id description
K11886 ECM29; proteasome component ECM29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017752 True 6360 mRNA 0.49 47 20881493 20913956

Neighbor

gene id symbol gene type direction distance location
AMCG00017751 NA coding downstream 107069 20748155 ~ 20774424 (-)
AMCG00017748 NA coding downstream 140098 20690221 ~ 20741395 (-)
AMCG00017749 LOC107702147,LOC107737977 coding downstream 213821 20653145 ~ 20667672 (-)
AMCG00017737 ndufb6 coding downstream 253510 20626084 ~ 20627983 (-)
AMCG00017741 NA coding downstream 259388 20620406 ~ 20622105 (-)
AMCG00017753 NA coding upstream 215401 21129357 ~ 21136560 (-)
AMCG00017759 NA coding upstream 382091 21296047 ~ 21304123 (-)
AMCG00017758 ptprd,LOC106577623 coding upstream 402511 21316467 ~ 21369489 (-)
AMCG00017757 ptprd,LOC103370113 coding upstream 485345 21399301 ~ 21403260 (-)
AMCG00017763 NA coding upstream 1395293 22309249 ~ 22366047 (-)
G92836 NA non-coding downstream 58533 20817675 ~ 20822960 (-)
G92838 NA non-coding downstream 59498 20820466 ~ 20821995 (-)
G92823 NA non-coding downstream 147071 20676659 ~ 20734422 (-)
G92822 NA non-coding downstream 205215 20672065 ~ 20676278 (-)
G92800 NA non-coding downstream 246613 20634672 ~ 20634880 (-)
G92892 NA non-coding upstream 214515 21128471 ~ 21128999 (-)
G92943 NA non-coding upstream 1060028 21973984 ~ 21974289 (-)
G92947 NA non-coding upstream 1131024 22044980 ~ 22124742 (-)
G92948 LOC107575789 non-coding upstream 1179009 22092965 ~ 22093405 (-)
G92953 NA non-coding upstream 1238416 22152372 ~ 22152578 (-)
AMCG00017725 NA other downstream 522868 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1462137 19412987 ~ 19419356 (-)
G92436 NA other downstream 2418317 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 3091744 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3393996 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2404137 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3350723 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4032139 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4083588 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5031185 25945141 ~ 25957648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location