AMCG00017782 (aco1)


Basic Information

Item Value
gene id AMCG00017782
gene name aco1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23296688 ~ 23313459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017782
TTAACACAGAGACGTCTCTCATAGCCTCTAGCTTGCCTGGATGTTTACAATCACAGCAGCACCACtgcatgaaagaaaataaactgaggAGGGGGGAACTGAGCACGTAGAGTACCTTTTGTCTGGAGAAAACCAGTGAACTTGGCACCTCATAGCTGCTGCTTTTCTGATGCTCCCCTGTTGAACAGTCTATTCTgaaggcttttgtttttgtgagggGTGATTAAAAGACACCATCAGTTGTACAACCATGAGGAACCCATACGCACACATTGTAGAACCTCTGGACCCAAAAGAGCCAGCCAAAAAGATCTACAACTTGTGCAAGTTGGGGGATCCCAGATACGCCCGCCTTCCGTTCTCCATCCGGGTGCTGCTAGAAGCTGCGGTCCGCAACTGCGATGAGTTTCTGGTGAAGAAGGACGATGTGGAGAGCATTCTCAACTGGaaggagacacagacacagagtgtTGAAGTGCCTTTCAAACCTGCAAGAGTCATTCTGCAGGACTTCACTGGAGTGCCTGCTGTGGTGGACTTTGCTGCCATGAGGGATGCTGTAAAGAAGCTTGGGGGAGACCCGGAGAAGATAAATCCAGTGTGTCCGGCTGACCTGGTGATTGACCACTCCATCCAGGTGGACTTTAACAGAAAGCCTGACAGTCTACAAAAGAACCAGGATCTGGAGTTTGAAAGGAACAAAGAGAGATTTGAGTTCCTAAAGTGGGGCTCAAAGGCTTTCCACAACATGAGGATAATCCCCCCAGGCTCTGGAATAGTTCACCAGGTCAATCTGGAGTACCTGGCCAGAGTGGTGTTTGACCAGGATGGCTTCTATTACCCAGACAGCCTGGTTGGCACTGATTCCCACACCACCATGATCGACGGACTAGGCGTGCTCGGCTGGGGTGTTGGTGGAATTGAAGCTGAAGCTGTGATGCTGGGTCAGCCCATTAGTATGGTCCTTCCAGAAGTAATTGGCTACAAGCTGCTGGGGAGCCCAGGTCCTTTAGTGACATCGACAGACATCGTCTTAACAGTCACCAAGCACCTAAGGCAGGTTGGCGTGGTGGGAAAGTTTGTGGAGTTCTTTGGCCCCGGTGTGGCCCAGCTCTCTATCGCTGACCGGGCCACCATTGCCAACATGTGTCCAGAGTACGGAGCCACAGCCGCTTTCTTCCCTGTCGATCACATCAGCGTCAAATACCTGGAGCAAACAGGGAGAGATGAAGATAAACTGAATTACATCACCCAGTACCTCAAAGCAGTAGGGATGTTCAGGGACTTCAACGACTCGTCCCAGGATCCAGACTTTACAGAGGTAGTGGAGCTCGACCTCAGCACTGTGGTTTCCTGTTGTAGCGGCCCCAAACGGCCCCAGGACAAGGTAGCGGTGACAGATATGAAGAAAGACTTTGAAAGCTGCTTAGGAGCCAAGCAAGGATTTAAAGGCTTCCAGGTGGCGCCCAAACATCAGACTGTTTCAGCCTCTTTCGAGTACAACGGCAAAGAGTACAAGCTGTCACACGGGTCCGTGGTAATTGCAGCCATCACCAGCTGCACCAACACCAGCAACCCCTCCGTGATGCTGGGTGCAGggCTGTTGGCCAAGAGAGCTGTTCAACAGGGGCTCAGTATGAAGCCGTACATAAAGACAAGCCTGTCTCCTGGCAGCGGCGTTGTCACCTACTACTTGAAGGAGAGTGGAGTGATGGATTACCTCTCTCAGCTCGGATTTGAAGTTGTGGGCTATGGCTGCATGACCTGCATCGGGAACAGCGGCCCTCTTCCAGAGCCAGTAGTGGAGGCCATCACTCAGAATGATCTCGTGGCTGTGGGAATCTTGTCTGGCAACAGGAACTTTGAAGGCCGTGTGCATCCCAACACCCGCGCCAACTACCTGGCCTCGCCGCTATTGGTCATTGCCTATGCCATCGCGGGCACCGTGTGCATCGACTTTGAGACCGAGCCTCTGGGCATCAACCCTCAAGGAAAAAAGATCTTTTTGAGGGACATCTGGCCATCCAGGCATGAGATCCAGGAGGTGGAGCGAGAACATGTAATTCCTGTCATGTTCAAAGAGGTCTATGAGAAAATTGAGAAAGTGAACGAGCGATGGAATGAGTTAAACTCTCCCTCAGACAAGCTTTACACCTGGAATCCCAAATCGACCTACATCAAATCTCCACCTTTCTTTGACAATCTGACTATAGACCTTCAACCCCCAAAATCAATAACTGATGCATATGTGCTGCTGAACCTCGGAGACTCAGTGACGACAGACCATATCTCCCCCGCTGGGAATATCGCACGCAACAGCCCCGCAGCTCGCTATCTGACGGGCAGGGGATTGACTCCTCGAGAGTTCAACTCTTACGGATCTCGCCGTGGAAATGATGCTGTCATGGCAAGGGGCACCTTTGCAAATATCCGCCTCTTCAACAAGTTCCTGAATAAACAGGCTCCTCAGACACTACACATACCTTCTGAAGAAACGTTGGACGTCTTCGATGCTGCTGAGCGATACCACCAGGCCGGCCTTCCCCTCCTCATCCTGGCAGGGAAGGAGTACGGCTCTGGCAGTTCCCGAGACTGGGCCGCCAAGGGACCTTTTCTTCTGGGCATCAAAGCAGTGCTGGCTGAGAGCTATGAGCGGATTCACCGCAGTAATCTGGTGGGCATGGGCGTCATCCCCCTGGAGTATCTCCCAGGAGACACGGCGGAGTCCCTGGGCCTCACAGGGAGAGAGCGCTACACCGTAGTCATTCCTGAGAAGCTTACACCCAGGATGATTGTTGACATCAAGCTGGACACAGGGAAGACTGTGAAGGCCCGCATGAGGTTTGACACCGATGTGGAGCTCACATACTTTCTCAACGGGGGAATCCTCAACTACATGATCCGCAAAATGCTGGAGAAGTAGAGACGGAGCTTTCAGGTGGAATTAAAATACCCAGTCGGAACTAACAGCCTTATTCCAGGAGACCGCACACATAAGAGCATCAGAAAAGCATATTCTCTGTTTATTCTGTCTATTTTTCCTACTTCTTTCTTCTAGGgcacagaaaatgtttaaactgaagGGAATTTGTCATCTTCTTTTCAATACAATATAGACATATTATGGttattttgtcagtttgttGGCTTTATACCCTACCTCACTAGAGtttaccacaaaacaaaacaaaattcttAGGTCAAACAAAGTCCTCTGTCCTGctgcactttttcttttgttgggGATCAATCCTACCTTGTCCgtcagtgatatctttcttgtgtGGGTGAAAATGTTACAGTTGCATTTGGCCTGCCTTTTAACTCCCTTTTTAAGATGGATAAGAAAGAAATTATGCATCTGTCAACTGTAAAAGCAGGTGGCAATACACACCTGCGTTTACATCAGCTCTGAGATCCTCTATGCTAGGATTTAATATGCTCAAGATGAATTTATGAAATACTGGTAATCATATTTTGTGCCACCTGGAGATGCCAGcaaaatgtgacttttttttttcatcctcttATGGTATGATGTGCTGCTTTTCTTCAATTAATCATGTTAATCATATTACTGATAAACTGTAGATTGATGGTATGTTTCTAACCTGAAGccagattaaatgtattttttgaatcatttcttcccccttttttgtattatttcctaAACCTTTGTCAGAAGAGTTGTTTCTGTACTACTCCTACCCACAGGTTATATTTAACAGGTGACAGGATCCCGTAACACGACTTTGATGGGGGGAGGCTAGTCCAGAATGACACTACACCAGCACATGTGTTCTGCTGAAAGGATATTCTGTTCTTGAAAATTAGTTTATGCTTTaactaaaatgatttaaatgtaaaatgtatattctgttCTTATGTAGATTGCATAAATTTAAAAGACATGGAATTTGGGACTGGAGTATTTTAGTCAATTATGACAAGACAACACAGATGCATCTTAATTTGAACTTTTCCAGAATAttggaataataaaataatgtaaacgtgattttttttaaaatttatttttcctttgagatgtatttttaaaggaattccAAACAGCATGTTTTCTTTCAAGCCCATTTCATTCTGAAAACTTGCTGAAATCTCTTGAATGCCTTAATTCTTTGTCTTGAACCTTTATAAAATGCTTGGCTTCATTCTCAAACTTCTGAGGAGGTTCTGAGATAGTCATTTTGATCTGGAAGTTTTTTACAATTAAGTACAGGCTTCTGTACTCACCACAGAATTTAACAATTTTCTTTTATGTGATTCAACTTGTCATAATAGCCCAAAAGTAGTCAAttttatggaaatgcaattttagAATTTGTCTCTGGTTCCCTGAATAtccaacattaaatacaaaatatcaggaatgtcatattttttgttttaatccaaaaGGTATGAAGAGATTACAGAAatgtggtaaaaaaataaatttttaaaaagcatgtaaaaaaacaaaaagttccTAAGTCCCTTTTCT

Function

symbol description
aco1 Predicted to enable aconitate hydratase activity; iron-responsive element binding activity; and iron-sulfur cluster binding activity. Predicted to be involved in citrate metabolic process and tricarboxylic acid cycle. Predicted to act upstream of or within cellular iron ion homeostasis and response to iron(II) ion. Predicted to be located in cytoplasm. Predicted to be active in cytosol and mitochondrion. Is expressed in blood and presumptive blood. Orthologous to human ACO1 (aconitase 1).

NR:

description
cytoplasmic aconitate hydratase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K01681 ACO, acnA; aconitate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017782 True 4507 mRNA 0.45 21 23296688 23313459

Neighbor

gene id symbol gene type direction distance location
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 17646 23264034 ~ 23279042 (-)
AMCG00017776 NA coding downstream 102144 23169573 ~ 23194544 (-)
AMCG00017763 NA coding downstream 930641 22309249 ~ 22366047 (-)
AMCG00017757 ptprd,LOC103370113 coding downstream 1893428 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 1927199 21316467 ~ 21369489 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 17485 23330944 ~ 23345917 (-)
AMCG00017787 NA coding upstream 42147 23355606 ~ 23388495 (-)
AMCG00017789 NA coding upstream 98202 23411661 ~ 23422126 (-)
AMCG00017788 NA coding upstream 110232 23423691 ~ 23430213 (-)
AMCG00017790 NA coding upstream 132465 23445924 ~ 23457016 (-)
G93159 NA non-coding downstream 442 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 1319 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 6007 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 457254 22839151 ~ 22839434 (-)
G93033 NA non-coding downstream 492304 22801371 ~ 22804384 (-)
G93165 NA non-coding upstream 13066 23326525 ~ 23329744 (-)
G93173 NA non-coding upstream 130752 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 594116 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 721237 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 730735 24044194 ~ 24046369 (-)
AMCG00017725 NA other downstream 2938063 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3877332 19412987 ~ 19419356 (-)
G92436 NA other downstream 4833512 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5506939 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 5809191 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4634 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 951220 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1632636 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1684085 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2631682 25945141 ~ 25957648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035274 aco1 coding NC_007118.7 CM002891.2 71463106 ~ 71486162 (-)