AMCG00017787


Basic Information

Item Value
gene id AMCG00017787
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23355606 ~ 23388495 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017787
ATGATTGAAGACAAGGGTCACCGAGTGACGGACTACTTTGTGGTGGCCGGGCTGACCGAGAAGGCCGTCCCCCTGGAGCAGGACCTATCGGAAACCAAGTCCAGCGGGCCCAAGGCTCCAATCACTGACCTGTCCGTCATTAACAAGTCAGTAGGGGAGACCGTCCCAGAAGGCTTCACCTGCATCGAGACAACCTACAGTGGCCAGCCCGCCAACCTCAACCATGGCAGCCTCAAGAGTCCCGAGCTCTTCCTGGTGCTGTATGAGGGGAAGGAACGGCTCATCCAGGGCTGCGAGGTCATCCAGGCCACTCCCTACGGCCGCTGTGCCAACGTCAACAACAGCTCGGCCACATCGCAGCGCATCTTCATCACCTTCCGCCGTGCGCCTCCCGTCCAGCCCCAGAACTCGCTGGCCGTCACCGACATCTGCGTGATCGTCACCAGCAAGGGGGAGACAGCGCCACACACCTTCTGTAAAGTAGACAAAAACCTCAACTGCGGCATGTGGGGCTCCAGTGTTTTCCTGTGTTACAAGAAGTCAGTCTCTGCGTCCAATTCGATAGCTTACAAAGCTGGTCTAATCTTCAGGTATCCTGAGGATGACTATGAATCCTTCCCACTCTCTGAATCAGTGCCTTTGTTCTGCCTTCCCATGGGAGCCACTATCGAGTGCTGGGCACCCAACACTCGCTACCCGCTGCCGGTGTTCTCAACATTTGTCTTAACAGTGTCTTCAGGAGAAAAGGTGTATGGTGCTGCTATCCAGTTTTACGAGCCTTACCCTGTGGAGCTGCTGACGGACAAGCAGAAGATGCAGCTGGGCCTCCTCAGCACTGTGGAGAAGAAGATGCTCCCCAACAAGCCAGTCAACACCAACAAGTGCATCTGCCTGCTCTCTCACTGGCCCTTCTTCGAGTCCTTCCGCAAGTTCCTCATGTTCCTGTACAAGCTCTCAGTCTCTGGTCCTCATCCTCTCCCTATTGAGAAgcACATCTCCCACTTTATGCACAATGTGCCTTTCCCTTCACCCCAGAGGCCAAGAATCCTAGtccagCTGTCTGCACATGACACCTTGATCCTGTCCCAGCCTGTTTGCACACCTTTACCACTAAGtGGAGCAGACTTTATCACATTGCTAATGAACCTTGGTCCTGAGAACTGTGCCACCGTGCTGCTGTTTGTCCTGCTGGAGAGCAAGATTCTGCTGCACTCACTGAGGCCGGCCGTGCTCACAGGGGTGGCTGAAGCCGTGGTCGCTATGATCTTCCCTTTCCAGTGGCAGTGTCCCTACATCCCCctctgccccctctctctgtcgGGGGTCCTCAATGCCCCCTGTCCCTTCATCATAGGAGTTGATTCCAGATACTTCGACCTGTACGACCCCCCTCCTGATGTTGTCTGTGTGGATTTGGACACCAATACGATCTACATGTCGGACGACAAGAAACATTATAACTGGAAACACCTTCCAAAGAAACCCTGCAAAGCCCTTTTGAACTCCCTGAGCAGCCTACATCACCAGTTGGCAACAGTTCACAGGACTGTGCAGGAGGGCTCTGCTGTGGAGATGACCCCCATTGAAGCGGACTTCTCTTGGCACAAGAAGATGACCGGGATGGAGATGGAGATCCAGGAGGCCTTCTTGCGCTTCATGGCCTCCATCTTGAAGGGGTACCGGGCATACCTCAAACCCATCACCCAGGCGCCCTCTGAGAAGGCCACTGCCGCAGACTCGCTTTATGACCTCCAAGGTTTCCTCAAAAGTCGGGATCGCACCCACCAGAAATTCTATTCCCAGCTGACCAAAACACAGATTTTCATTCGCTTCATTGAGGAATGCACCTTCGTCAGTGACAAAGACACTAGCTTTGCATTTTTTGATGACTGCATTGAGAAGCTTTTTCCGTCAGATAAAGGAACGGACAAGGTAGCAAAGGTGGAGGGGGAGTCCTCCGAGGACACCCGGTTGATGGAGCTGGATGAGTCGCAGAAGAGTGAGCACACAGTCTTTGTCATGCCACCCGAGACACCTGTAGAAGACGGCCCCGACCCGCCCGGCAAATACAGCTATACAAACTTCCCTCGGTTACAGCTGGAGCTGTTTGACCGGCCCCAGGAGCTGCGGCCCTCCCTGAGCCGAAGGGCAGTAGGTGGCAGTGTGTCCAGCAGCCCTGCTCTCCTGGCTAAAAGAACTAAGCAGGAGATCAAATCAGCCTCCAAAATGGCAAAGCGCTTTTATGCCAACCCTCCCCTGTGGGCAAAGTGCCTGTTCAGCCACTGCTACAGCCTGTGGTTCATCTGCCTGCCGGCCTGTGTGAGGGCCTCCCACTCCAAGGTCAGGGCCATGCAGCAGGCCTACGAAGTCATCGTCAAGATGAGCAACACTGAAGTCGAGGTCCTTGACGAGGCAAGTGTGTGCTACCGTGTGGTGATGCAGTTGTGTGGAATCTGGAGCATGCCTGTCATGGCGGTGCGAGTTCACTTTGAGATGAGGAAGGCTGGAGTCCGGCCTAATGCCATCACCTATGGCTATTACAATAAGGCGGTTCTAGAGAGCCCATGGCCAAGTCAGAACCGAAGTGGCCATTTCATGTGGACCAAGGTGCGCAATGTTGTGCGAGGGGTGGTGCAGTTTAAACAGGCACTCCGCAAGACATCTCCCTCAAAAAGACCCATCCTAATCACCACAGCTGCAGTCGATGGCCCCGGTAGGAGTGATGGGGACCGGAGTAGCCACAGCAGTGCAGACAGCGTCAACGACACCAACGGGGGGGAGCACACGCTGTTCGTCAGGAGCCTCGTTGTCGTAAACGAGCCGGACAATCACTGCATCACAGGCGGTCAGTCGGACCAGGGCTACGGGTCGAAGGATGAGCTGCGGCAGGAGGTTTCGGACAAACCACAGGCCATGGCTTCTCTCCCAGAGGCTGACCCATCCAGCAAGTCAAAAACCAAGCAAAACGGGGAGGATGTGGCAGAGTCTCAGGACAGCGTGCTCGTTGTGGCAGAGCCCCCCAGCCCTGTGGACATGCCAACCTCGGGACACAGCATTGTCAAGCTGTCCACTGGTAGCATGGACAGTGGAGCTGGCAGAGTACCCAGCGGCAGCACCGCTGGGCCACTCTTCTCATCCCAAGGTGCCAGTGAGGATGCGGTGTTCACAGAGGAGGGCCTCCCTACACCCCCACGCAGCCCTGCTGACACTGGGCCTCCGCAGCAGCGACCACAGCGACCAAAGCCATTCACAGAGCGGAGCTGCAGCTTCAGCGCGGAGAGCCGGACGGGCATCCTGCTGAAGAAGGGCAGCCTGGATATGAGCGTTGACGAGATCGCCATCAAAATGGGGGCTGACGCCAAGATCCTTGCAGCTGCATTCTCTGGCACCAAAACCCCACCACCTGCGAGCACCTCCTTCAAGGGGCTGGAGTccgggcagcagcagcagcaagatTCAGAGGAGGATATGAGGACTTCATTTGACAGGCTGTCAGAAGAGAGCAGTGTGTCTCCAGAACCAACAGAGCTTGGTGCGAGCGATGCCACTACAGGAACCACCCCCAGTGAGCCAGCTCTTTCCCAGCGAGTCTCAGAGGTGGTGCTGAGGAGTGAAGTTACAGAAAAAGACTCTACCAAGAGAAGCAGCTTATACTCTAAGGCGGTGGAGAGGGAAGATGTACAAGTAGGGGCCGACCCCTTGTCTCTGCTCGCTTCTGAGAGTGCAGATGTTGTCTCAGTCCAGAGCGAGGACAGAGGTGTACCACTTGTGGTATCCAGGAACCTGGCTGATGAGATTGAGATGTACATGAACCTCAAAAGCCCTCTAGGCACCAAGTCCTCCAGCATGGAGCTACACCAGGGTGACATAAAGGAGAtggtggcccagtcagagccagTCAAGGCCCATGAGCGCCGGTCcagcctcccctcccctcccgtGAAGACACCCACTTCTGTCAGTGATGTCTCAAAGCCTGGCCCGACTGTAGCCAGGTCCAAGACCTTCACAGGGAAGCCCAAAAGCTCTAATCAGGCCCAGAATCAGCGTTCTTCACTCACGTCCCTTGTACGCACGTCCCAGCACGGCTCACTGGGCTCCGTCATCAATAGCATCTCTGGCATCAAGATGGACAGCCTGCTGTCTGGGCCCAAGATGGACGTGTTCAAGTCAAGCATGAAGCAAGCTGCTAATGTGGCCAGCAAAGTGTGGGGAGCTGTGGCTTCAGCGTACTCCTACTCGGATGACGAGgaGGAACACGTACAGGGGGAGGGCAGCTTTCCTGTAGGGCTGGAGGAGCACCTCCTATCTAGGAGTGGGGGGGACAGCCCCACCTCCAGGGGATTGATACCAGGCCTGGCCTCCAACGGCCTGACCCAGAGCAGCACTAGcctgggcagcagcagcagcagcagtgatgcAGGGAGACTACAGCACCCGCCCTaCGTTGCCGGACGGTGTGTGAAGGGACCGGAGTCGGAGAAATCGGAGCAGAATTCCTCTCACCACGCCAGCACTTCCAGCATCTATCAGAACTGCGCCCTGGAGGTGCTGATGTCGAGCTGCTCTCAGTGCCGGGCCTGTGAGGCCGTGGTGTATGACGAGGAGATCATGGCTGGCTGGACAGCTGACGACTCCAACCTGAATACCACCTGTCCCTTCTGCAGGAGGACCTTCCTCCCCCTGCTCAACATCGAGTTCAAGGACCTCCGAGGCACTGCCAGCTTCTTCCTAAAGCCCAGCACCTCTGGAGACAGTATACACAGCAACAATGTGCCCATAGCAACAGAGCCAGCAGAGCCAAAAGCTGGAGCTCCTGTTCCCACCGCTGACCTGATCAGCTTTGCAGATCCTCCGCAAGACGGGCCACTGGGGAGCTTAGAGAAGAGTGCTGCTAAACCGAAAAGTGTGGGCGGACTGGTGGTGCAAATGGACCCATTGGGGCTGAGTGTCAAGAAGGGGGCATCTCTGACACGCAGCAACAGTATAGGGGGACCCCTACAGAACATGGACCTCTCCCAGCGGCCCTCCCATGGCGTCTCAACCACCAGCCTGCCCAACAGCCTGCAAGAGGTGTCGGACACCCTGGGTCAGAAGAGGCCCAACCCCCTGCCAGTGTCTGTGCCCTACCTCAGCCCTCTGGTGCTTCGTAAGGAGCTGGAGTCTCTGCTGGAGAACGAGGGGGACCAGGTTATTTACACTCAAAAGTTCCTCAACCAGCACCCCATCATCTTCTGGAACCTGGTGTGGTACTTCAGGAGGCTGGACCTGCCCAGCAACCTGCCTGGTCTCATCCTCACCTCTGAGCACTGCAACAACGGAGTGCAGCTCCCTCAGACGTCCCTGTCTCAGGACAGCAAGCAGGTGTACGTCCAGCTGCTGTGGGACAACATCAACCTGCACCAGGAGTCGGGAGAGCCGCTGTATCTACGCTGGAGGAGCCTGTTGCAGAAGAAGGCCTCGTTGTCTCCAACAGATCACCAGGACACCAGGGCCCTGCTCAACAGCATCGTGAGAAGCATCCAGACCAACGATGTGTACGGACCCATCAACCTCCTCCTCCGAGAGATCAAGAAACACCCGGACATCAAACGCCAAAGGAGTATTTACAGAGAGATCCTCTTCTTATCACTAGTGTCTCTAGGTCGAGAGAACATTGATATTGAGGCTTTTGACCGCGAGTACAAGGTGGCCTACGATGAGCTGAGCCCAGAGCAGCTGAAGGCCCTGCACATCATCGATGCCCCCCCCGGCAGCAGCATCCAGTGGTGTCTGAAGTGCTTCGGGGCGCCGGTCATCTGA

Function

GO: NA

KEGG:

id description
K20163 DENND4; DENN domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017787 True 5802 mRNA 0.57 32 23355606 23388495

Neighbor

gene id symbol gene type direction distance location
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding downstream 9689 23330944 ~ 23345917 (-)
AMCG00017782 aco1 coding downstream 42147 23296688 ~ 23313459 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 76564 23264034 ~ 23279042 (-)
AMCG00017776 NA coding downstream 161062 23169573 ~ 23194544 (-)
AMCG00017763 NA coding downstream 989559 22309249 ~ 22366047 (-)
AMCG00017789 NA coding upstream 23166 23411661 ~ 23422126 (-)
AMCG00017788 NA coding upstream 35196 23423691 ~ 23430213 (-)
AMCG00017790 NA coding upstream 57429 23445924 ~ 23457016 (-)
AMCG00017791 NA coding upstream 70432 23458927 ~ 23464763 (-)
AMCG00017792 NA coding upstream 80344 23468839 ~ 23519026 (-)
G93165 NA non-coding downstream 25862 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 59360 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 60237 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 64925 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 516172 22839151 ~ 22839434 (-)
G93173 NA non-coding upstream 55716 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 519080 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 646201 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 655699 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 912925 24301420 ~ 24301980 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 33652 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 2996981 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3936250 19412987 ~ 19419356 (-)
G92436 NA other downstream 4892430 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5565857 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 876184 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1557600 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1609049 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2556646 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2623993 26012488 ~ 26015942 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035182 dennd4c coding NC_007118.7 CM002891.2 59068601 ~ 59123066 (-)