AMCG00017789


Basic Information

Item Value
gene id AMCG00017789
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23411661 ~ 23422126 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017789
ACAACACGAGTTCGATAGAGGAAGTAGTTTTACGTCAGAGCACAGATGCTGGATAAGTTCCGGGTCACTCGATTAAACCTTCTACGCATGCGGAGCTTGAAATCTTTTGGCGGTTTGAAATAGTTCATCCCGGAGAccttacaaacaaacaaacaaacaaacgaaatAACCCAACTTCCAAACCGACTGTGCGAAGACGAACAGGGGCGTTAGTAAGTTGGGAAATGAGAAGCAATAAGAACAATACGGGACTTTTCTTCTTTGCATGGATGGAGAGAAGTAAATAAGCACGATTTCAGCGCTGTCCTGGATGTGCTTTCTTTGATTAATGAGCTGGACAGGTTAATACGTCCAACTGTCGCATATTCTATGTAGACCCTTTTACGGATATATAGATCATAGAGATGTCATAGGAAAATGTCTGGCCATCGAAAACGTAATTCAAAATATCTGTGGTGGTCACTCCTTTCCCTGGGGTTTCAGCCGGGAGCCGCCGCCGCCTCGACTGGCAGAACAATTCGCCACATCAGCCTGGGAGTgCATATGTTTGACAAACCAAATAAAGACGCCTTTTACTTAGTCGCCTACTTCTTATTTGAAAAGCTAAACCCCAGCCAAGCTAAAGAAGCTTTCAGGTTTTGTTGGCCAGTTTTGGATAGAAAGACTGATGCTGAATTTCGGAAAATATCTTATGGCTGGCTCCGGGATATCTCGACTGAATGTGGGGATGCCTTTCCCAAAGTGGCGGCCTCCATATTCCTTTCTCCGGGAGGCTCCAAGTTCATTAACCTCATGCTCCACTTTGCCAAGCATGTCATGATGCAGGAGATGAAGTCTTACAAAGGAGATGGTGCATGGATACCAGAAGCAGCGGCGTCTAAAGCTCAGTCTGTGGAGACGGCACGGAGAAGATGTCAACTGGTGAAGAACAGGTTTCAGCACTCTGCTGTCAGTGAAGACTGTGTGATCCAGGAGTACCAAAAGAAAGCACAGTCACTGGTGAAATCATTAAGGGAACTAAGAGCAGATGGTGCCAAATATGATGATTTGCTGAGGCAAGAACCAGAAGGGGAACAGGAGAAGAGTCTTCGAACTGAAAAGAtcaaaaagGTTCGATTTCTGTGGTCACATCTCAGCGAAGTCCTTGCACTTCTGGAAGAAGAGAGGAAGGTTGTGGATTGTGTGGTTAAAGGAACTGTTGACCAGTACACATTGGATGGAAATGAAATCTCCTTGAAAATCCCTAGACTTTTGCTTGAACGGATAGAAAACTCTGTACAAACTTCCCATGTTGGGAATGTGTATGAGGCGGGACAGGTCAACATCCTGAAAGTGCTGCAGCTGCTGAATGAGGCTCTGAAGATCCTGCGGGAGGAGCGCTCCCAGGCTGGCGCTCACATAGTTGAGCTCGATGTGCTGCCGATGGCGGACAAGGTGACTCTCCACAAAAGGACCCTAGATGCTCTTAAACTCATGAGgaagaaaataacaatgcagGAAATCCCTGAAGTGGAAGCATCTATCCAGAAAATGGAGAGAGACTGGGAAAAGAAATGGGAAGACTACCTGTACCAGAAACCATTAACTCTGTTGATCAACAAGGATCCTGCTCTTGACCTACTCCCACCCATGTCACCTTTGTCCTTTGAACCAGCTACTGAGGCCAGCTGCAAGTCCAGTGTGTTCTCTCAGTACCCAGCCAAGCTTTCTGGGCTTTTACAAGTCGACTTACCCCAGGATGGGTTCCCAGCAAGAAGATGCATTTCCTTGGGAAGGGCTGATGGAGAGGATGTAGTCCCCAAAAGAGCCTCTGTTTTCTACCTGTCCTGCAGCTCTGTGATATCCGCAAGACTCCCAACACCTTGCAGAGCTGCATCACCAAGCCCTGCAAAGACAAGCTTTAAGAGAACTCCTACAGCTGTGAGAAACGTGCATCCAAAAGCGGCTGGCCGGACGAAAACCACAACTATTCTACAGAAGGAATGTGACAATCTGGCAGACCagTTTGCTGAAGCGGTCACCAGAAGCCCTTCGGAGTGTGGGATTAGGGGGCTGGggctggaggagctgctgaaCACGCTGTCCGACCCCTTCTCCACACGGAAACAGCTGCCCCGCACGCCAGAAAGCTTGATTTCAGATGTGAAAAGTTCCTGGAGGCGAGCAGTTGAGGAAGGGGAGGCAGAAAAGAGGGGACTGTTGGGAACATTTTCAGATGGGAATGGAAGTCCACTCCTCACACTGTCGGATGTCAAGGAGCCCGTTCCAAGCCCTCTTGTATCTTTCCTAAGCAAACCACTACTTCAGGCTGAAAATGCTGCTGCAGAAAGCCTGAAGGCTGGGAATTTGAGTAGGCCATCTGTGAGGCGAGAGAGGGAATCTTTGCACTCCACGCTGTCCTGGAACTCGACGCGGCTTGTCGGGTTAGACAGTCGGGACAACAGTGGTGTTGTGCAGTTTAGCATTGCTAACGAAACCATGCCAGAGATGCTTGGTGATGAAAGTCTCCAGAGTTTCAGTGATGTAGAGTGTAGAGACCAAGAGTCGAGCAGTGCtgtggagaaggaggaggaggaggaggaggaggaggaagtggaAGATGACCTTTTCCTCCCGAGGCTGTCCTCAGAAGCTCTGATACCAAGTATTGACCTGCGTTCTCTGCGCAGTCGATTCGATCAGATTCGAGCTGTGTACCGAGAGATGTCGTTCACAGGCTGTGACAAGGAGGTGCCGGTCGAGCTCTGCCCCTCCCCGGCTGATCTAGAGGCCTTGAAGCCTGGAAACTGTGAGGCAGCAGCCACAGTGTTCTCCCTCGACCTGGACTCCTTGGAAAGCCCATCGGCCACCAGCAGAGAGGAGCGCTGGAGCCTCCCCCCGCTGGTGACCTTCTCGCCCATGGATGATCTTCAGAGTGGATTAAGAGAGGGGGTAGAGAAGATTGAACTCTGATTTTGGGatagcacttttttttttaatagaagaTAATGTCCCTTTTTTATGAAGCTCTGTTGCTGTGTAAGTGTAATTGAGATGTGTAGAGTACTTGCTATGCCTTAATACATCTAATCAGTGCATTTAGgaatatttgaatgcataagtaaaaATACAAAGGCAATGTCTTCAGCTTCTTGAATGGTCTAACTTTTAACCCAAGAGTATTTTTCTACCTGTATTTTAGGGCTCAGCCCAACTCTTGAGCTTTATAAGGCATTTAGAGAACACAATTAACTGCTTAGCTAATGCAATTTCACATCTCTCCTGACTAAGTTGCTTAGATtttcactgaaatgtaattgatcCCTTACATTTGTAAGTTATTGTACTAGGACCTACCACTGGGATGCAGTGTACATGATTTGTAAATATACTggtaaaataaaacctgttgaaTTGCAATGTATGCAGTTTCAAGGTTTATTAGCAAGCATGTCTGAAAGCAGCCCCAAATCTGTAACCAGTCTTCACaacctttttttctgttaataaatCTGTTGACAAGTATATTGCAGAAGGACATGAGGTAGACTGTCTTGTAACCTGTATTGTACAGTACATGGTATCATTTGCTATGTATTGTCCTTGAAATGGACACAAGGTGGTGCTGGTGTGCAAGATTCCAGTTACATAGCTTGCTGGATGCTGTAGGCaaaatgaagtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K16589 HAUS6; HAUS augmin-like complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017789 True 3682 mRNA 0.47 16 23411661 23422126

Neighbor

gene id symbol gene type direction distance location
AMCG00017787 NA coding downstream 23166 23355606 ~ 23388495 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding downstream 65744 23330944 ~ 23345917 (-)
AMCG00017782 aco1 coding downstream 98202 23296688 ~ 23313459 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 132619 23264034 ~ 23279042 (-)
AMCG00017776 NA coding downstream 217117 23169573 ~ 23194544 (-)
AMCG00017788 NA coding upstream 1565 23423691 ~ 23430213 (-)
AMCG00017790 NA coding upstream 23798 23445924 ~ 23457016 (-)
AMCG00017791 NA coding upstream 36801 23458927 ~ 23464763 (-)
AMCG00017792 NA coding upstream 46713 23468839 ~ 23519026 (-)
AMCG00017795 dnaja1,LOC106591825,LOC108431796 coding upstream 195554 23617680 ~ 23627418 (-)
G93165 NA non-coding downstream 81917 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 115415 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 116292 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 120980 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 572227 22839151 ~ 22839434 (-)
G93173 NA non-coding upstream 22085 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 485449 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 612570 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 622068 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 879294 24301420 ~ 24301980 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 89707 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3053036 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3992305 19412987 ~ 19419356 (-)
G92436 NA other downstream 4948485 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5621912 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 842553 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1523969 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1575418 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2523015 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2590362 26012488 ~ 26015942 (-)

Expression


Co-expression Network