AMCG00017807


Basic Information

Item Value
gene id AMCG00017807
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23671644 ~ 23690436 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017807
AACAGCCAAGGCAGTTTGGGTCTACATTCACCACACTGTACTTTACCAATCATGTCCAGTCCAAAGAGAAAAGCTGAGACGGGGCATAAAGACAGAGGGGATTCTGGAACCATTtttgcattgaaaaataaaaatatctacaGGAGGTCAAAAAGAGAATGGAAACCCCTGGAGGATCGGAGCTGTACCGATATCCCATGGCTACTCATATtcattgttttctgcattggCATGGGATGCATCTGTGGCTTTGCTGTTGCCACCGGAGCAGCTTCAAGGCTGGTTTTTGGATATGACAGCTACGGGAACACCTGTGGCCAGAAGAACTCAAAAATAGAGGGCATAGAATTGAGTGGAGAGGATCAGACCCAAAAGAGatttgtcttcttCTTGGACCCCTGCAACATTGACCTAGTTAACAGGAAAATCAAGTCCATGGCTCTGTGTGTCTCGAAGTGTCCGGACACAGAGTTAAAGACTTACAGTGATGTCAAGAAGTTTGCAACAGCGAATGaatcTTACCTCTGTTCCTATCAGGTGCCAATCAGTAAATATACCAGTCACGCGGACAGATCTACATTGTGTCCCAAACTTCCTGTACCTGCAAGCAAGTCAATCCCTATGTTCCATCGCTGCACTCCGGTAGACATCAGCTGCTATACCAAGTTTGCTGAAGCCCTCATCACCTTTGTCAGTGATAATAGCATGCTGCACAGACTGATTACTGGAGTGATGACCAGCAGAGAGATCATCATGGGCCTTTGTGTGCTGGCCCTAGTGCTCTCCATGATCCTGATGGTCATCATCCGGTACATCTCCGCAGTGCTCGTCTGGATCCTGACGGCTCTGGTAGTGCTGGGCTCACTGGGGGGAACAGGTGTTCTGTGGTGGCTCTATGTGGATCACAAGAAGTCGCTGAATAACCTCATCGCTAGTGATGAAGTGGAAGTAGCCAAGGACAATGTCCAAGCACTGCTGGTCTATGCGATCGCTGCCACCATTTTCACGgtGATCTTACTCCTGCTCATGTTCTTTATGCGGAAGAGAGTGGCCCTTACAATTGCCCTGTTCCACGTGGCTGGGAAAGTTTTTATCCATCTTCCCCTGCTCGTCTTCCAGCCTTTCTGGACCTTTCTGGCACTGATGTTTTTCTGGATGTACTGGATCATGGTTTTGCTGTTCCTGGGCACAACAGGGCATCCAACTCAGAATGAGAAGGGCTTGGTAGAGTTCAAGATGAACGGCCCGTTGCAGTACATGACTTGGTATCATGCAGTTGGATTGATCTGGATAAGCGAggaTAAATCCAAGCTGCCACTCACTCCCATACTGTCCTCTGTATTCCGGCTCCTCCGCTACCATATTGGTACAGTGGCTAAAGGATCCTTCATCATTACATTAGTGAAAATCCCTCGCTTGATCCTCATGTACATTCATAACCAGCTAAAAGGAAAAGAAAATGCGTGTGCCCGCTGCATGTTAAAAGCTTGTATTTGCTGCCTGTGGTGTCTCGAGAAGTGCCTCAATTATTTGAACcagaatgCATATGCAGCTACAGCCATCAATAGCACCAATTTCTGCACCTCGGCAAAAGACGCCTTTGTAATTCTGGTGGAAAATGCATTGAGAGTCGCGGCTATCAATACTGTtggagattttgttttgtttcttggaaAGATCTTGATCGTGTCCAGCACAGCCTTTGTGGGAGTACTGGCTCTGAACTACCAGCGGGATTACACTGTGTGGGTCCTTCCCCTGATCATAGTGtgcctctttgctttcctggtTGCCCATTGCTTCCTCTCCATATATGAAATCGTGGTGGACGTTTTGTTCCTGTGTTTTGCCATCGATACCAAATACAATGACGGAAGCCCCGGCAAAGAGTATTACATGGATAAGGCTCTTATGGAGTTTGTGGAGAACAGCAGGAAGGCGATGAAGGAGCGCGGCAGGGGCAGGCCGGACTCGGCGGACGGCCGGGAGATGAAGCCCATGGCCCCTGGAGCAAGTTCAGCTTGACCAAAATCACCTAATGGGACTTTTTTAGACattccaaatgtttatttttaccaATGTGTAACATGTTTACTATGGTTTCACTCCAgggaatacaatattttaataagaaactGTATAATAACTCTTACGTATTTAAGCACTTTATATCAAAGctctgtgtattttaacaactgATGCATTTTAGTAGtgatttcctttttatatatatgactaaaagaaaagaaaatcatctAGATTAATGCAGTACTAAAATGTCTAGATTCATTGCAAAAGTTTAGTTTGATCTTGTTTGAAATGTAAGAAACAATTTCAATTGAATTTTGTAAAATACCACTACATGCATTTTTTCCTGTAATGAAActgactttatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K06515 SLC44A1, CD92; solute carrier family 44 (choline transporter-like protein), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017807 True 2430 mRNA 0.44 16 23671644 23690436

Neighbor

gene id symbol gene type direction distance location
AMCG00017796 LOC105419749 coding downstream 25097 23633455 ~ 23646547 (-)
AMCG00017795 dnaja1,LOC106591825,LOC108431796 coding downstream 44226 23617680 ~ 23627418 (-)
AMCG00017792 NA coding downstream 152618 23468839 ~ 23519026 (-)
AMCG00017791 NA coding downstream 206881 23458927 ~ 23464763 (-)
AMCG00017790 NA coding downstream 214628 23445924 ~ 23457016 (-)
AMCG00017805 NA coding upstream 59935 23750371 ~ 23760237 (-)
AMCG00017808 NA coding upstream 105477 23795913 ~ 23812448 (-)
AMCG00017806 LOC108277608 coding upstream 131298 23821734 ~ 23840163 (-)
AMCG00017804 NA coding upstream 167402 23857838 ~ 23863656 (-)
AMCG00017811 NA coding upstream 184687 23875123 ~ 23884454 (-)
G93173 NA non-coding downstream 131524 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 341900 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 375398 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 376275 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 380963 23290332 ~ 23290681 (-)
G93324 NA non-coding upstream 217139 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 344260 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 353758 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 610984 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 814946 24505382 ~ 24505610 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 349690 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3313019 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4252288 19412987 ~ 19419356 (-)
G92436 NA other downstream 5208468 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5881895 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 574243 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1255659 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1307108 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2254705 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2322052 26012488 ~ 26015942 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G100534 NA non-coding NC_056712.1 CM032081.1 17599359 ~ 17599578 (-)