AMCG00017828 (rhoh)


Basic Information

Item Value
gene id AMCG00017828
gene name rhoh
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24611429 ~ 24612007 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017828
atGGCGTTGAACTCCATCAAGTGCGTGCTGGTGGGTGACTCAGCGGTGGGGAAGACGGCCCTGTTGGTGCGCTTCACCTCCGAGACGTTCCCCGACTGCTACACGCCCACAGTGTACGAGAACACGGGTGTAGAGGTGTTCATGGACGGCATCCAGATCAGCCTGGGCCTGTGGGACACGGCTGGGAATGACACCTTCAAAGGCATCCGCCCCATGTCCTACCAGCAGGCCGACGTCGTGCTGCTTTGCTACTCGGTGGCCAACCACAACTCCTACGTGAACGTGCGCCACAAGTGGATTGACGAGGTCAGGGACTACCTCCCCAGTGCCCCGGTGCTGGTGGTGGCCACACAGACTGACCAGCGGGAGATGGGCCCGCACCGAGCCAACTGCATCACCTCCGCTGAGGGCAAGAAGCTCGCACACGACATCCGGGCCAAAGGCTACTTGGAATGTTCGTCTCTTAGCAATAGGGGGGTGCAGCAGGTGTTCGAATGTGCGGTCCGGACTGCCGTCAACCAAGCCAAGAAACAATCCAGGAGGAAGCTTTTCGACGTGAATCagtgcaaaatattttaa

Function

symbol description
rhoh Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human RHOH (ras homolog family member H).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoH

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017828 True 579 mRNA 0.59 1 24611429 24612007

Neighbor

gene id symbol gene type direction distance location
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding downstream 14640 24591017 ~ 24596789 (-)
AMCG00017824 NA coding downstream 43400 24440536 ~ 24568029 (-)
AMCG00017818 limch1 coding downstream 358345 24119477 ~ 24253084 (-)
AMCG00017815 tmem33,LOC107741195 coding downstream 557497 24048822 ~ 24053932 (-)
AMCG00017812 NA coding downstream 717484 23885184 ~ 23893945 (-)
AMCG00017826 NA coding upstream 16364 24628371 ~ 24649998 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding upstream 73296 24685303 ~ 24701049 (-)
AMCG00017833 lias,LOC102787141 coding upstream 104443 24716450 ~ 24725692 (-)
AMCG00017832 NA coding upstream 120688 24732695 ~ 24739501 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding upstream 147374 24759381 ~ 24788341 (-)
G93434 NA non-coding downstream 105819 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 309449 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 565060 24044194 ~ 24046369 (-)
G93350 NA non-coding downstream 573819 24034696 ~ 24037610 (-)
G93324 NA non-coding downstream 700750 23907575 ~ 23910679 (-)
G93500 NA non-coding upstream 65158 24677165 ~ 24679900 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding upstream 113931 24725938 ~ 24730222 (-)
G93576 NA non-coding upstream 310460 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 337961 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 494795 25106802 ~ 25107082 (-)
AMCG00017819 NA other downstream 340834 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1289475 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4252804 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5192073 19412987 ~ 19419356 (-)
G92436 NA other downstream 6148253 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 334088 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 385537 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1333134 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1400481 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1492019 26104026 ~ 26107805 (-)

Expression


Co-expression Network