XLOC_006173 (BX324188.1)


Basic Information

Item Value
gene id XLOC_006173
gene name BX324188.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39324865 ~ 39337183 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012156
ATGGAGTCCTCAGGTGGTCATGATGATGAGTGGTTGAGCTCGGATGAATCTGAGTTTACTCTCCATCCTTCGGTGAATAACTCGACTGTTCCCCCCCAAACGCTTCTGGTGCTGGAGACTCTGATGGTGTTCATGAGTCTGGCCGCGGTCATGGGAAATGCCCTGGTCATTGTGATTGTGGCAGCCACTAAAACCTTCCACACTGTCACCTCTGTCCTCATCATTAATCTGGCCATTAGTGATTTCTTTGTGGGTATCGGAGTCATGCCTTTTGTGGCAGTTTCCATTATGAACAACGGATGGGTCAACTGCAAAAATCTCTGTCTGTTTGTCGGCTACACATCCTCAGTCTGCTGCACTGCATCAATCTTAACACTCGCTGCTATCGCTCTTGACCGTTACTTCTCCATCGTGGACTGTCTGCGGTATGACTCGCGCTGCACAGTATGGAGAGCGGGTTCAGCGGTGCTATGGATCTGGCTGCAGGCTATGGTGACCTGCTGTCCTCCTCTCCTGGGCTGGAGCACCATTGCTTATGTGGCTCCAGTCTTCAGCTGCACCGTCATCTGGGCCAACAGTCCAAGCTATACGGTCACAACAGCCTGCTTTTCCTTCCTTCTCCCAGCTGTAATCATCCTCTTCTGTTACGCAAAGATTGTCCGAGTCGCACGGTACCACTCTAGAAGGATCCACAGCCTAGAAGAACATCTCCAGCGCAGTAGATCCAACCTGAATCTCTCACTCATAGACTCCAACACTCCATCCAGACTAGTCTACCATGTAAGCGGGAGGTTTGTGATGGATCGATTGGAAGAGAATGCTCCAGATGCACCAGCTATTGGACGTTTTCAGTCCTTCCTGACTCAGATCCACCCTCAGCATCTCAATcaacctcaccatcatggagtcCTGAGGTTGTTTTTGATTATTGGTGCTTTCTTTTTGTGCTGGACACCCTATATTAGTGTAGCTCTGGTGCAGGCCATTGAAACCTCCCTGTCCCGACCCAACAGCCTCATCCCTCCATCAGCAGTCACTTTCTCCTATTGGCTGGTGCTGTTTAATTCAGATATCAACCCGCTTCTGTATGCGCTTCTCAGTAAGCGCTTCCAAGGGGCCTTGCAGAGCTTGCGATGGAAAATCCATGGAAGGTTGAGGAGCATTTTGGGAAGTGGAGAAAAGGAGAGGTCTGTAGGTGGAGGTGAGAGTGACCCAACCAATGGGACGACCCAAAGCTCCTCAAGAAATGGAGCAGATTTGTCCTATCCCTCTGTTATCAGCCTCAGCTCACAGTTTCCCAATAGTTTCAGCGAGCAGCTCAATAGTTCTCCGTTGGCTAATTCTTGTCGTCCTGTTTGTGATAAATGTTGTGGAGAGCGGTTGAGGGGGGTGGACCACCTGCAGGTTCCTTCCAAACAGCGCGAGAGGAGCAGGCTCCCTTATTCTGCTGCTACTAAGAAGAAACAAGCTACCTTCTTTTATGGACAGATCACTGTAAGAGTGGAACATGACAtttcttga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075970

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012156 True 1521 mRNA 0.50 3 39324865 39337183

Neighbor

gene id symbol gene type direction distance location
XLOC_006172 si:dkey-85a20.4 coding upstream 1739 39277178 ~ 39323126 (+)
XLOC_006171 FRMD1 coding upstream 53360 39236141 ~ 39271505 (+)
XLOC_006170 fam135a coding upstream 96483 39182099 ~ 39228382 (+)
XLOC_006169 col19a1 coding upstream 208902 38990939 ~ 39115963 (+)
XLOC_006168 col19a1 coding upstream 468709 38814521 ~ 38856156 (+)
XLOC_006174 marveld1 coding downstream 194867 39532050 ~ 39533365 (+)
XLOC_006175 NA coding downstream 347288 39684471 ~ 39727464 (+)
XLOC_006176 NA coding downstream 508081 39845264 ~ 39873628 (+)
XLOC_006177 BX005216.1 coding downstream 632166 39969349 ~ 39969465 (+)
XLOC_006178 golga7bb coding downstream 681818 40019001 ~ 40061830 (+)
XLOC_006165 NA non-coding upstream 1040666 38226076 ~ 38284199 (+)
XLOC_006163 BX322660.1 non-coding upstream 1174228 38150517 ~ 38150637 (+)
XLOC_006162 BX005106.1 non-coding upstream 1650571 37674178 ~ 37674294 (+)
XLOC_006160 NA non-coding upstream 1780544 37538653 ~ 37544321 (+)
XLOC_006149 NA non-coding upstream 3329698 35989155 ~ 35995167 (+)
XLOC_006179 NA non-coding downstream 990377 40327560 ~ 40330374 (+)
XLOC_006181 NA non-coding downstream 1022977 40360160 ~ 40419304 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_03284445_03291645 NA coding CI01000012 null 3284345 ~ 3291645 (-)