AMCG00017869


Basic Information

Item Value
gene id AMCG00017869
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26076728 ~ 26082767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017869
ATGTTTATTGATCtggctgtttttattgttttgatagAAAACCGCATGATACTCGATGCCTTTGCCCAGCAGTGCAGCCGGGTCCTGAGTCTCCTCAACAACAACGGCAAGTTCCTGGACCCCAAACCGCCGCCATCGATGATGCCGCACATAAAGCAGGAGGAGGGGTGCTACATGGAGAGGTTAGGACCGTGCCAGATGGGCAAGGGAGCCCCCAGCGACATAGAGACCCCGGACAGCCTCGACACAGAGCTGCAGTATGCGCAGAAGAAGCACCAGACCTCCGCCTTCCTGCGGGTCTTCACTGAGTCCCTCCAGAGCTACCTGATTGCCGGTAACCGGCCGTCTCAGAGCTCCACTGGGGACTACTGCCACACCACCGACATGGAccctctctccagctccccgGCACACACTCTGGGGGGCTGGACATCGCCCACCACCTCCGAGTCCCACGGCCACCCCTCGTCCACTCTaccagaggaggaggaggaagaggagggatGCTGTCCGCGCtgtctggagctggagcaggaggtCCTCTCCCTCCAGCAGGAGAACGAGGAGCTGCGGAGGAAACTGGACAGCGTTCCAGTGCCCTGTCAGAACGTCTTAGACTATTTCAAAAGAGTGCTTCAGCATCATAACCAGTTTGTGCAGCCGGTAGCGGAGGAGCAGCTGACGGAGGGAAGTAAGCAGCTGCTGGGCAACTATCCTGTTTACATCACCAATAAGCAGTGGGACGAGGCGGTGAACTCCTCCAAGAAAGATGGCCGCCGGCTCCTGCGCTACCTGATTCGGTTTGTGTTCACCACAGATGAGCTGAAGTATTCGTGCGGGctggggaagaggaagaggtcCGTGCAGATGGGAGATGCCGGCCCCGAGAGACGCCCTCTAAACCCAGTTAAAGTCACATGCCTCAGAGAGTTCATCCGAATGCACTGTGCCTCAAACCCGGACTGGTGGATGCCTTCCGAGGAGCAGATCAACAAGGTGTTCAGCGACGCGGTGGGTCATGCGCGGCAGGGCCGGGCGGTGGGCACCTTCCTGGGCAGTagctgcagcagcagcggcGGCAGCAACAGCACGTACTTTGAGAGCTTTGAGAGTCATCTGTCACAAGATGACATCTTCCTCAAGGTTTCCCAAGACGGCTCTGGGGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017869 True 1170 mRNA 0.58 4 26076728 26082767

Neighbor

gene id symbol gene type direction distance location
AMCG00017867 LOC107754176 coding downstream 26781 26033115 ~ 26049947 (-)
AMCG00017862 dnah6 coding downstream 153503 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 710178 25346820 ~ 25366550 (-)
AMCG00017852 NA coding downstream 852447 25115938 ~ 25224281 (-)
AMCG00017850 NA coding downstream 971586 25100833 ~ 25105142 (-)
AMCG00017870 NA coding upstream 13673 26096440 ~ 26097928 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 29346 26112113 ~ 26193833 (-)
AMCG00017876 NA coding upstream 201198 26283965 ~ 26407993 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding upstream 354994 26437761 ~ 26439111 (-)
AMCG00017874 NA coding upstream 361651 26444418 ~ 26452343 (-)
G93718 NA non-coding downstream 266875 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 559128 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 695690 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 965638 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 969646 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 175329 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 270750 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 416147 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1679919 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1696270 27779037 ~ 27784050 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 60786 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 119080 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1058516 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 1127592 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1806133 24264679 ~ 24270595 (-)
G93795 shisa3,LOC102786300 other upstream 21259 26104026 ~ 26107805 (-)
G93796 NA other upstream 26293 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 1755484 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 2016138 28098905 ~ 28144589 (-)
G94172 NA other upstream 2791394 28874161 ~ 28875923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_05820127_05827282 BEND4 coding CI01000000 null 5818464 ~ 5827282 (-)