AMCG00017878 (si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522)


Basic Information

Item Value
gene id AMCG00017878
gene name si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26642382 ~ 26650068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017878
TTTTGCATTCGGCCcaaataaaatggaagaagAAGATTACGAAGatgtaccaataaataaaacctgggTTTTATCACCCAAAGTCTATGAAAtgagGCCCACAGTAATTGAGACTGCAGTATACGTAAACAGCATTGGGCCGGTCGACCCGATTAATATGGAATATACCATTGACATATTCTTTGCCCAGACTTGGTATGATAGTAGGCTGAAGTTTAACAGCTCTATGAAGCTACTTATGCTTAACAGCAATATGGTGGGCAAAATTTGGATTCCAGACACTTTCTTCAGAAATGCTAGAAAATCTGACGCCCATTGGATTACAACACCTAATCGTCTGCTCAGGCTGTGGAATAATGGAAGAGTCATGTATACATTACGGTTGACTATTAATGCAGAATGCTATCTTAAACTGCATAACTTTCCTATGGATGAGCATTCCTGCCCACTGGAGTTTTCAAGCTATGGCTATCCTCAAAATGAAATAATCTACAGATGGCAAAGGAGGCCTGTGGAAGTTGCAGATCAAAGATACTGGAGATTATACCAGTTTGCATTTGCAGGGTTACGGAATTCATCAGACGTGGCGCACACTCAATCGGGAGAATACATGATCATGACAATATTTTTCGATCTGAGTAGAAGGATGGGCTACTTCACAATTCAGACATACATTCCCTGCATACTGATTGTGGTTTTGTCATGGGTGTCATTCTGGATTAACAAAGACGCAGTACCTGCCAGGACTTCATTAGGTATTACAACAGTATTGACCATGACAACACTGAGCACTATTTCCAGGAAGTCATTGCCAAAGGTGTCGTACGTGACAGCCATGGATCtctttgtatctgtgtgtttcatCTTTACCTTTGCTGCACTGATGGAGTATGGGACTTTGCATTATTTCACCAGCAACAggaaatcaaagaaaacaaaagccaacAATGCACCGAAATCTGCCGTTGTAGACATCCGACCGGGGACATCGCTGCTGCAGATGAACAACATCGCTCCGTACCAAGAGGAGGATGATTATGCCTATGAATGCCTTGACGGGAAAGACTGTGCCAgcttcttttgttgttttgaagacTGTCGTACAGGAGCTTGGCGGGAAGGAAGAATGCACGTCCACGTTTCAAAAATCGACTCATATTCCAGAATATTCTTTCCTACAGCATTTGGGTTGTTCAACCTTGTGTAC

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit gamma-1-like

GO: NA

KEGG:

id description
K05186 GABRG; gamma-aminobutyric acid receptor subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017878 True 1207 mRNA 0.42 8 26642382 26650068

Neighbor

gene id symbol gene type direction distance location
AMCG00017875 guf1 coding downstream 174514 26458218 ~ 26467868 (-)
AMCG00017874 NA coding downstream 190039 26444418 ~ 26452343 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding downstream 203271 26437761 ~ 26439111 (-)
AMCG00017876 NA coding downstream 234389 26283965 ~ 26407993 (-)
AMCG00017872 atp8a1,LOC107550857 coding downstream 448549 26112113 ~ 26193833 (-)
AMCG00017879 NA coding upstream 27189 26677257 ~ 26708132 (-)
AMCG00017880 zgc:110204,LOC107688011,LOC107710476,LOC107589116,LOC107716030 coding upstream 144733 26794801 ~ 26820001 (-)
AMCG00017885 NA coding upstream 272726 26922794 ~ 26930593 (-)
AMCG00017884 dapp1 coding upstream 327992 26978060 ~ 26985839 (-)
AMCG00017887 mk1i1 coding upstream 338226 26988294 ~ 26992258 (-)
G93843 NA non-coding downstream 143205 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 288658 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 384015 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 832529 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 1124782 25517286 ~ 25517600 (-)
G94008 NA non-coding upstream 1112618 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1128969 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 1443400 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1769848 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 1774964 28425032 ~ 28425243 (-)
G93796 NA other downstream 532308 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 534577 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 626440 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 684734 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1624170 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 1188183 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1448837 28098905 ~ 28144589 (-)
G94172 NA other upstream 2224093 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 2619167 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 3935661 30585729 ~ 30596417 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_03610257_03623051 GABRG1 coding CI01180000 null 3609420 ~ 3624142 (+)