AMCG00017916


Basic Information

Item Value
gene id AMCG00017916
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28694548 ~ 28698519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017916
GTTTGCTTTAACAGGGAACGAATATGTAATATGCGTGTTTCCCGCCGGACCCGTTTCCAAGCGGCTCTGTAGTTATTCTAGTATGGTGAGTCGGGCCGGATTTGCGGCGTAAACGCAAACACAAGCACATGAAAGCAGTTTTATCTCAATTGTGTGAAACCTGAGCAGATGATCTTTTGCACCCGTGTGCTGCCGGGTTTTATATTCCAGAAACAAAGCTGACAGGGACCATGGCCGCCACCGTGAGTCTGGAGCTGGATCCCATCTTTCTGAAAGGCTTGGGATACCTTCACTCGAAGAGCAAGGACTCAGCGGAGAAGCTGAGGGCACTGCTGGATGAGTCCATGTCGCGAGGGAGCGACTCCAGCTATCGCTCGTCGTTCAAGGAAGTGGAGCTACCCAAAGTCTCCACGACGAAAGTGAGCTCCAGCAAACAGGAGTCCAAGTCCTCTTCCAGCTCGTCTTCGTCCGGGAGCAACAATGGCAAGTCCAGCAGCTctgagaagaagaaggaggcagAGAAAAGACCGCTGGAGAAGGTGAAAGTGGACCCCGTGGAGGGAATCGAACCCCCGAAGAAGCCTCGCCTGGAGAAGCAGGAGAACCGGTCTTCTCCCATCACTGTCCAGACCAGCAAGGACCTGGCTCTCCCGGACCTGTCCAGCTTCGACGAGACCAGCGCCGACGACTTCGCAATGGAGATGGGCCTGGCCTGCGTGGTCTGCCGGTGCGTGATCGTAACCGACGGCCTCGAGAGTCGCCTGAAGGAAGTGCAGATGACGGTGACCTCTGGGAACCAGCTGGTCGAGTGCCAAGAGTGCCACAACCTCTACCACCAGGACTGCCACAAACCGCAGGTGACGGACAAGGACGTGAACGACCCACGCCTGGTATGGTACTGCGCTCGCTGTACCCGGCAGATGAAGCGCATGGTAAGGCCCGGTCCAAGCGACATCCTGAAGAGTCTAGTTTCAGAACGGACCTCTTCCTTGCCCTCTCCGTGCACGCACCGGTCGGCTGGTCTTCGGCTCAAACGCGATGTCGACCGTTGTTGTTCACAGGCCCAGAAGACCCAGAAGCCCCCACAGAAGCCCGCTCCCGTCGTGGCGTCGGCCGCCCCCGTGGTGAAGGACGCGCTGGTCAAGAAGCCCGAGGTCAAGCCCAAGCAGGACACTGCCAGCACCTTCCAGGCTTTCAAGAGGACAGAGGTGAAGGTCTCCGCCGCGGTGCTGGGAACTccctcctccagcagctcctcGGCGCCGGCAGCCAGCGGCCTGACCGGATGGGCGGCCTTCGCGGCCAAGACCTCCACCGCGGGCCCGGCCGGCACCAAGCTGGGAGCGTCGGCGCCGAGtgggaacaacaacaacaacaacggcggtggtggtggcagcagtAGCAGCAAGTCGTCTGCCGCCTCGTCCGCTCCGAAGCCGCCGGGGCTCTCGGGTCTGACCGGCAGCAAAGCGGGCCTGGGCTCCAAGATGGCGTCGGggagcagcaacaacaacaacggcTCCAGCCCCGTCCCCCTGAAGCCGCCGCCGCCCCTGACCCTGGGGAAGCCCGGCCTCAACCGCTCCTCCAGCAGCGATGGCGGCAACAAGGTGGGCGCAGCAGGGCCCAGCGGGGGCGGGGCAGGCGGCGTTGCCAGCCAGGCCGGTGGAGCCGGGAATGGGGGAGCGGGGGGCAACGGTGGCGGCAGCGGCAACAACAGCAGCGGCAGCAACGCCCCCACGTCTCAGGAGTCGCAGCTCAACGCCATGAAGCGGCTGCAGATGGTGAAGAAGAAGGCGGCGCAGAAGAAGCTGAAGAAGTGAACGTGCCACGGGGCAGACCAGTTTAGAGGCGTGACCGGCCCGGTTTACCCCTGTGGGTTGAGGGCCCGCTTTGGGGGGTTTTATATGGATAGAAAGCAAGAAAAGACCCTTGAATCCTGAAAGGAAGTGCTGCTGAGAACAGGACGCCAGCCCTGACCGAGTGGGATCTGTGCGTCTCTCGCGCCCGGTGTCGGTCGTCTCTGCGAACCAGGAGGGTCTTTtgctaataaaatgaattatgctTTTTAAGGACATCAGTAGATGGTAGACTTCACTCTTCAATAcagaggatttaaaaaaagtaactgACCCGTGAGACTGTTGtgctcttttcttgttttttttcgtgttgcttttgtttttgattgtgttGTTTCCATACAGGAGGTATAAATAAGCTTTCTGACAGTGTCCGGATGCCTTCTCCTTGTGCGTCAACCCTCAGTCTCTGCACTCGTGCTTTGTGAGGTTCAGGGCCATGCATATTTGTGAAGAAACCTTTCCCGTGTGTAAGTAAAGAAGATTGAGCTAACTCAGTGTACTACCTTGCCTgtctatatattaaaatactctGACCTGAAAAGAAGAAACCAGGAATGATAGCGGTAGTTTACATTACTGTATTATCATAGTATTGAAAAAGCCACCAGTGCTTCATTCTCTTGCAGTCACTCCGAGATGTCCCTCGAACCCGACTCCAGCAGTGACAAGTTCGTGTAGCCATTACTGCCTGAATTTCAGCACTTATAAACCACGCTACACAAAAGCAGATTCCCCGCTGAACAGACTTGTTTCATGAGACGTTTCGGAGTGCTAAGAGACAACACAATAAAGTTCAATGCAAATAATGG

Function

GO: NA

KEGG:

id description
K13149 INTS12; integrator complex subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017916 True 2674 mRNA 0.57 6 28694548 28698519

Neighbor

gene id symbol gene type direction distance location
AMCG00017911 NA coding downstream 29853 28649941 ~ 28664695 (-)
AMCG00017909 cxxc4,LOC103148507,LOC106610359 coding downstream 124893 28568960 ~ 28569655 (-)
AMCG00017908 NA coding downstream 236610 28457696 ~ 28457938 (-)
AMCG00017907 NA coding downstream 251260 28434032 ~ 28443288 (-)
AMCG00017903 NA coding downstream 849777 27842212 ~ 27844771 (-)
AMCG00017917 tbck,LOC102796740 coding upstream 116462 28814981 ~ 28841636 (-)
AMCG00017918 NA coding upstream 147859 28846378 ~ 28852152 (-)
AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding upstream 333360 29031879 ~ 29049397 (-)
AMCG00017925 lef1 coding upstream 380490 29079009 ~ 29091940 (-)
AMCG00017926 lef1,LOC103361279 coding upstream 401989 29100508 ~ 29117642 (-)
G94074 NA non-coding downstream 269305 28425032 ~ 28425243 (-)
G94073 NA non-coding downstream 274286 28419916 ~ 28420262 (-)
G94060 NA non-coding downstream 597390 28093468 ~ 28097158 (-)
G94012 NA non-coding downstream 910498 27779037 ~ 27784050 (-)
G94008 NA non-coding downstream 927217 27762686 ~ 27767331 (-)
G94137 NA non-coding upstream 35305 28733824 ~ 28735744 (-)
G94218 NA non-coding upstream 508951 29207470 ~ 29207804 (-)
G94246 NA non-coding upstream 587688 29286207 ~ 29286747 (-)
G94337 NA non-coding upstream 1213463 29911982 ~ 29914837 (-)
G94358 NA non-coding upstream 1297730 29996249 ~ 29997513 (-)
AMCG00017906 elavl2 other downstream 549959 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 854758 27838251 ~ 27839790 (-)
G93796 NA other downstream 2584474 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 2586743 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 2678606 26012488 ~ 26015942 (-)
G94172 NA other upstream 175642 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 570716 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 1887210 30585729 ~ 30596417 (-)
G94543 NA other upstream 1929469 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 3561188 32259707 ~ 32263865 (-)

Expression


Co-expression Network