AMCG00017944 (trmo)


Basic Information

Item Value
gene id AMCG00017944
gene name trmo
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29971090 ~ 29975805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017944
GCGCGATTTGTCTTCACCATGAGCCGAGACCCCAGGGAAAGTTCTAGTTGGCCAGCCAAACAGGACGCTGTGTCGCGCCCTCGCTAAACTTTGACACCTCGTGTTCGTGTGTCGACCGAGGTTTTCATTCGGGGTTTGTGAatattttcccaaaataaaacaactgcgAACTATAAGGatagtgaaaaacaaaaggaaaacgtCAGCGCACCACCATGTCGGGATCGTGCTCTTGCAGGGAACACCTGCACAAACTGCAACACCAGATCTCCGTGATGCGGAAAGAGATTAAAAACCTGAGGCAGCTCACTGACGGTGCCGTTCGCTCGCACAGAAAAAACCTGAGCTCCCTGCAGTCGGTTTTGATGGACATTAAGCAGGAGGGCAGCCAGATGACCGCCGTGTCGCCCCAGACCGACAGCACGCCCCTCTCACTAGAGCAAGGGACTGTTCAGACTCTTCCCATTGGCTACATCGAGTCCTGTTTCTCTGCTAAAAACGGCACCCCAAGGCAGCCCACCATCTGCAGTCTGTCTCGTGCCTCTCTGCAAATACGCAAGAGCGTTTTCAACAATCCAGAGCATTCGCTGCTGGGGTTAGACCAGTACTCCCACGTTTGGATTATAttcctgttccataaaaatGGGCACCTGAATTACAAAGCGAAGGTGAAGCCCCCTAGACTGAATGGATTGAAGACGGGGGTCTTCTCCACCCGCAGCCCCCATCGCCCCAATGCCATCGGCCTCACCCTCGCCAGGCTGGAGAGCATCACAGGAGATACACTTCATTTGTCCGGAGTCGATATGATCGCCGGGACCCCCATTCTGGATATTAAACCCTATATCCCAGACTACGATTCTCCACTCAGCCGGACGCACGCGGACACTGCGGCCTCTGCCGGCGCTCGCCAGGATGACTCGGCAGGCCTGTCTTCAGAAGAGGACGCTGAAGCCGTTGAAGACCCGGGGTCAGGGGGAGGGGATCGTCCCGGCACCGCAGCAGCTGCACAACCCGGGCAGTGTGCCGGCCCGAGCTCCAGGGCTGTCTTCCGCAGAGATGAATCTAAGGCCCTCCTGATGGCCTCCAGCGATGCGCCCTGCGCCTCGGAATCGAAAGCCCCTGCCGCGATCTCCCGAGGGAAGGACGTCCGCTCGGTCTTGGCGGAGATCTCCAGCTACGTCAGTCAGGAAGAGATCTTCCCCACCTCATCTGCGGACGACACCGGCTCCCGGACGGGCGGCTCCGCTCACGGGCCCGGGGAGGGTGAGGGCCTCCGAAACAGGGAAGAGATCCGGTATGGTGAGGAGTCCTACACCTCCATCGCCTCCTGGATCAGACAGTCTCCTGTAAGTGCTCTGGATGTCCGCTTTACTCCGCACGCCGAGAGGGACCTGAAAGAGTTTCGACCACCGGGCCAAGAAGCGCCTGGGAAGCCGTGTTTCCGGTTCCTGCGCTCCCCCGAGGAGGCGGCGGCGGCCATCGGAGGCGTCCTGTCGGCCGACCCCCGCTCCGTGTACCGGCGGGCCCGCTGCCTGGACCAGCTCTTCCACTTCTGCCTGGACACGGCGCACGTCACCTGCTGGTTCGGGGACGGTTTCGCAGAGGTGCTGCGTGTCACGCCCGCCCCCCTCCCCGAGGGCACCAGCACCGCCGCGCCGTGATGGAGAGCCGGTTTGGCCCCGTCCTGGGCCGAGGTCGATTAGTGTCTCTTCAGCCTCGCCCGAGAGACTGTCGTGTCAGGTTTCACACCCGCAGTGTCGGTGCTTCAGGAGAAATCCGGCAATCAGAGAATTCTCCGGTTAAACCCTAAACTTTGCTAAATCTGGCCGTGCCTTGATTTTGTGCAGGGGGGTGAATGTCGGATAATGCACAGGAACGTTCATAATGGCACCTTTACACAGACAGGCAAACTCAAATAAAAGCTTGGCACCCAGGCTAGAGATTTGTGAGGAACTAAGATCTGGTGTCGCATCAGAAGAAACCACGTTTTGGTCTTTCAATGTTGACCGGAACGCTGTTGCCCCCTACTGGCCACTCAGATGTTCATTGCtaataaataccaaaaacaaaga

Function

symbol description
trmo Predicted to enable tRNA (adenine-N6-)-methyltransferase activity. Orthologous to human TRMO (tRNA methyltransferase O).

NR:

description
tRNA (adenine(37)-N6)-methyltransferase isoform 2

GO: NA

KEGG:

id description
K22900 TRMO, trmO; tRNA (adenine37-N6)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017944 True 2075 mRNA 0.58 6 29971090 29975805

Neighbor

gene id symbol gene type direction distance location
AMCG00017947 NA coding downstream 4464 29965499 ~ 29966626 (-)
AMCG00017939 bnc2,LOC106933596 coding downstream 386658 29577109 ~ 29584432 (-)
AMCG00017937 bnc2,LOC107737408,LOC107737409,LOC107678088 coding downstream 426185 29538155 ~ 29544905 (-)
AMCG00017938 NA coding downstream 443593 29525435 ~ 29527497 (-)
AMCG00017934 psip1 coding downstream 605542 29355039 ~ 29365548 (-)
AMCG00017945 NA coding upstream 939 29976744 ~ 29983256 (-)
AMCG00017949 NA coding upstream 35505 30011310 ~ 30030524 (-)
AMCG00017955 NA coding upstream 136485 30112290 ~ 30112964 (-)
AMCG00017954 NA coding upstream 146060 30121865 ~ 30129314 (-)
AMCG00017963 cisd2,LOC106602754 coding upstream 456398 30432203 ~ 30439609 (-)
G94337 NA non-coding downstream 56253 29911982 ~ 29914837 (-)
G94246 NA non-coding downstream 684343 29286207 ~ 29286747 (-)
G94218 NA non-coding downstream 763286 29207470 ~ 29207804 (-)
G94137 NA non-coding downstream 1235346 28733824 ~ 28735744 (-)
G94074 NA non-coding downstream 1545847 28425032 ~ 28425243 (-)
G94358 NA non-coding upstream 20444 29996249 ~ 29997513 (-)
G94359 NA non-coding upstream 22549 29998354 ~ 30002282 (-)
G94392 NA non-coding upstream 133166 30108971 ~ 30109182 (-)
G94483 NA non-coding upstream 480393 30456198 ~ 30461173 (-)
G94482 NA non-coding upstream 483744 30459549 ~ 30460888 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 697922 29269235 ~ 29273168 (-)
G94172 NA other downstream 1095167 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 1826501 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 2131300 27838251 ~ 27839790 (-)
G93796 NA other downstream 3861016 26109060 ~ 26110074 (-)
AMCG00017972 dcaf10 other upstream 609924 30585729 ~ 30596417 (-)
G94543 NA other upstream 652183 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 2283902 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 2295889 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 2309680 32285485 ~ 32308080 (-)

Expression


Co-expression Network