AMCG00017975 (clg15h9orf72,LOC103354026)


Basic Information

Item Value
gene id AMCG00017975
gene name clg15h9orf72,LOC103354026
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30832793 ~ 30848229 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017975
ATGTCGTCTGGCTGCCCGCCACAGTCCCCAGCTGTGGCTAAAACCGAGATCCCCTTGGAAGGGGAGTCGCCGTTGCTGGCCGCCACCTTCGCCTACTGGGACAACATCCTGGGCCCGAGGGTGCGGCACATCTGGGCCCCGAAATCGGAGCAGCTGCTCCTCAGTGACGGCGAGATCACCTTCCTGGCCAACCACACCCTGAACGGGGAGATCCTGCGCAGCGCCGAGTGTGGGGCTGTGGACGTCAAGTTCTTCGTGCTGGCCGAGAAGGGCGTCATCATCGTGTCGCTGATCTTTGACGGGGACCTGAAGGGGGACAAGAACACGTGCGCCCTGTCCATCATCCTTCCGCAGTCTGAGCTCAGCTTCTACCTGCCCCTGCACACGGTCTGCGTGGAGAGGCTGACACACATCATTCGCAAGGGCAGGATATGGATGCAGAAGTCGCACAGCGTACCAGAGCATATCGACatcaAGGACACTGTGCTCAACGATGATGATATTGGAGATAGTTGTCATGAAGATTTCCTTCACAAGGCGATTAGCTCTCACTTGCAAACGTGCGGCTGCTCTATGGTGGTGGGGAGCAATCCAGAGAAGGTGAACAAGATTGTTCGAACTCTTGCTCTCTTCCTCACTCCGGCAGAGAGAAAGTGCTCCAGACTGTGCCGGGCCGAGTCTTCCTTCAGATACGACACTGGGCTCTTTGTTCAGGGCCTGCTGAAGGACGGGACGGGCAGTTTCGTGCTCCCCTTTCGCCAGGTGCTGTACTCCCCGTACCCCACCACGCACATCGACGTGGACGTCAACACGGTGAAGCAGATGCCTCCTTGCCACGAACACATGTACAACCAGCGGCGCTACATGCGCTCCGAGCTCTCGGCCCTCTGGAAGGCGACCACGGAGGAAGAAATCGCCCCGGACACCATCATACTGGCAGACGAGACGTTCACGCCGGATCTGAATATTTTTCAAGATGTCATGCATAAGGACACACTGGTGAAATCATTTTTAGATCAAGTGTTTCAGCTCAAGCCGGGCCTGTCCCTCAGAAGCACGTTTCTTGCTCAGTTCATGCTCATCCTTCACAGGAAAGCACTGACGTTGCTTAAATACATAGAGGATGAAACACAGAAGGGGAAGAAGCCGTTCAAGTCCCTGCGCAGCCTGAAGACCGATCTGGACCTGACCGCCGAGGGGGACCTGAACATCGTCATGGCCCTGGCCGAGAAGCTCAAGGCCGGCCTGCACTCCTTCGTGTTCGGGAAGCCCTTCTACACCAGCGTGCAGGAGAGAGACGTCCTCATGAGCTTCTGA

Function

NR:

description
PREDICTED: protein C9orf72 homolog

GO: NA

KEGG:

id description
K23609 C9ORF72; guanine nucleotide exchange protein C9orf72

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017975 True 1317 mRNA 0.57 9 30832793 30848229

Neighbor

gene id symbol gene type direction distance location
AMCG00017974 pigg coding downstream 21458 30810404 ~ 30811335 (-)
AMCG00017976 pigg coding downstream 56352 30744971 ~ 30776441 (-)
AMCG00017977 NA coding downstream 110743 30658626 ~ 30722050 (-)
AMCG00017971 NA coding downstream 225665 30605513 ~ 30607128 (-)
AMCG00017965 LOC107749781 coding downstream 251797 30538968 ~ 30580996 (-)
AMCG00017979 NA coding upstream 132821 30981050 ~ 30982903 (-)
AMCG00017983 eif4e,LOC107730661,LOC107696296,LOC105908755,LOC107680975 coding upstream 751429 31599658 ~ 31607699 (-)
AMCG00017984 adhx,LOC107379637,LOC106924987,LOC103137353,LOC106961688,LOC105936217,LOC103471823 coding upstream 774716 31622945 ~ 31644198 (-)
AMCG00017986 NA coding upstream 844098 31692327 ~ 31715433 (-)
AMCG00017987 ppargc1a,LOC106577610,LOC106608616 coding upstream 1014500 31862729 ~ 31883678 (-)
G94563 NA non-coding downstream 111291 30718352 ~ 30721502 (-)
G94533 NA non-coding downstream 218474 30610821 ~ 30614319 (-)
G94483 NA non-coding downstream 371620 30456198 ~ 30461173 (-)
G94482 NA non-coding downstream 371905 30459549 ~ 30460888 (-)
G94392 NA non-coding downstream 723611 30108971 ~ 30109182 (-)
G94577 NA non-coding upstream 131666 30979895 ~ 30980552 (-)
G94590 NA non-coding upstream 531026 31379255 ~ 31380225 (-)
G94598 NA non-coding upstream 609650 31457879 ~ 31458254 (-)
G94600 NA non-coding upstream 668603 31516832 ~ 31517036 (-)
G94622 NA non-coding upstream 773371 31621600 ~ 31622378 (-)
G94543 NA other downstream 174300 30627988 ~ 30658493 (-)
AMCG00017972 dcaf10 other downstream 236376 30585729 ~ 30596417 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 1559625 29269235 ~ 29273168 (-)
G94172 NA other downstream 1956870 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 2688204 28098905 ~ 28144589 (-)
AMCG00018000 slc1a1 other upstream 1411478 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 1423465 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 1437256 32285485 ~ 32308080 (-)
G94835 NA other upstream 1606856 32455085 ~ 32456410 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other upstream 1752960 32601189 ~ 32605751 (-)

Expression


Co-expression Network