AMCG00018012


Basic Information

Item Value
gene id AMCG00018012
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32407429 ~ 32425235 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018012
CGGCGTGTCAACACGGGAGTGAAGCGCAGACGCGCTAACATGGCTGCAAAGGACACACACTCGCTGGAGTCCCCCTTCACCCTGGACCCCTACAGGGAGCgggaaggggaggaggaggaggaggaggagggcagcagcagcagcagcagcagcagcagcgactCCGGCTCCAGCCGCTCAGACTCAGATGACCTGGAGCCGGAGTGGCTGGACGACGTGCAGAGGAACGGGGAGCTGTTCTACCTGGAGCTGAGCGAGGGCGAGGAGGAGGCTGCTCTGTCCCAGGCCGCCGCTCAGAGCCCGGCCCCCAACCACGTGCGCTTCAGCGAGCAGGAGGCCGAGATCATCCCGCACGGGGGGCCGCCGAGAGAGGGGCCCAGGCCAGAGCCCCGGCTCAAGAAACTGGCCAAGATCCTGAGGAGGAAGCGGCCATCCCGGCGCGGcggagacagacagggaggcCACGGCTGCCCGTCCTCCTCACGGCCGGCTTCCATCCTCAAGAGCCAGCCGGGGCCCAGGCCGGGGCCGACCCTGCAGCCGGCGCTCAGGGATGTCTGCGTCTACGTCAACCCCAAGAGGCTGACGGGCGGCGGGGCGGCCCAGGGGGGATTGCTGGAGGCCTTGATCGGCATCCTCCACCGCCCGGTCTGGGACAGGAAGCAGGACGGCCAGGGGGAGGAGCCCAGCGCAGCCAATGAGGAGGAGAGGCTGGCCGTGCACGGGCTGCTGCCAGGAAGCCCCGCCCTCAAGTGCGGCCAGATTCTGATTGGAGACGTCCTCATCGCTGTCAACGACGTGGACGTGAAGCTGACGCTGGAGACGGCCCCTGTCCACGCAGAGGCCGCCGGCCCGGTGCCCTCCCCCGGCTGCCCCGCCGCCCCGCCGGTCAGCACGCTGGTGCGGCTGCTGTGGGGGGAGGAGACGGCGGAGCTGCAGATGTCCCTGGGCGACATCCCCCACGTGGTCATGTACCTGTCGCTCAAGCTGGACTCGGAGTCTTCCAGAGAGGAGCAGGAGATCCTGTACCAGTACCCAGTGTCCGAGGCGTCCCGGCCACTCAAGGGCCTGCGCGGCATCTTCCTCACGCTCTGCGACATGCTGGGGACCGTCACCGGGGGACAGATCATCAGCTCAACGCTGCTGCTGAACAAACAGCTGGTCCACGTGGGCTACTGGAAGGAAGGAGACGCGCTGCTGGTCATCGGCCTACCTGCGGACAGGGTCCCTCTTCCACAGCTGCAGCCCGTCATCAGGGGGCTCGTCCGGACGCTGAAGGTGATGTACGGCTCCCTGGACAGGGCGTTCTGTGAGGCAGACAACGTGCCTCGGCTGGATCATTTCTTCTGCCTGTTCTTCCAGCAGCGGCTCCAGCCAGAGAAgctgtgggggggtggtggtggcggATCTCCTGCCCCCGACCTCTGCGGCCCACTGTTCCTGGACTGTGTGCCGGCGCTGCGCTGGCTCTCCTTGCCCCCCGAGACCAAGGTGGAAATCGACACCATCCTGTCTGACCTGGAGTCGGCGGACTTTGGGGAGATGTCCGAGGATTACTACGGCATGAGGCGCCTGTATGTGACTCTGGGCTCCTGCTTGTTTTACAAGgGGTATTTGATCGCGACCCACCTGCCCACAGAGCAGCTGATGGACGTGTCTCTGTACTGCCAGCACTACTGCCTGCTGGCCCTGGGGGGGGCACAGCGCGTGGGCCAGCTGCTCGTGTGGAGGGAGGTGTTTCCTCAGCGTGGCTCTCCGCCGGACCCCCCCGCCCAGGCCGCGCAGGGCTACACCGAGCCCCCCCACGCACGGCACTTCCTGCTCATCGTGGGACTGAGACATTTCCTGCAGTGCGTGCTGCTGGAGGCGGGGGGCTGCGCGGCACGGGCGGAGGGCAGCCAGGGCCCGGACTGTGTATACGTGGACCAGGTCAAGGCCACACTGCTGCAGCTGGAGGGCCTGGCGGGCAGCATCGAGGAGCGCCTGGCTGCGCCCCCCACACCCGGCCTGTCCTGCGCAGACTGGTTCCTGCCGGCTGGCCGCGACCGGCTGGACAGTGTCCCCGGCTCCCCCGTGTTCGGACGGCTGCCCGGCTCCTCCAAGGCGCCCTCGCCCACCGGCCGGCGGGGGCTGTTCGGGGAGGCCACCCTGCGGTCCCGGAGACCCAGCCCCCAGCGCAGCCTGTCGGACAGCGGCGGCGAGGGACCCGGAGACGTCTCCGCGCTCAGCCCGCTCTCCACCCCTGAGGCCGGGCGCCGGCAGGGCCGTAGAGACTCGCTGGGCTCCGGGGGCTCCGAGGGAAGTGGCGGCAGCACAGCTCTACTCAAGAGCTCCAAGAAGAGGCTTCCGAACCCTTTCCATCTGGGCACCCTGAAGAAGAGCCTGTCCGAGAGGGAGACGGAGGAGATGTACAACACCCTGAAGCTGTCGTCGGGCGTGGAGAACACGCTGTTCCACTACGTGTGCATGGAGACCGCGCGGGGCATCTTCCTGGCGCCCACGCACCGGGAGCTGGCGCAGCTGAGCGGCTCCATCCACCCGCAGCTCATCAGGAACTTCCACCGCTGCTGCGTGGCCATCCGGGCCCTGCTGAGGCCCGGCCGCTCCACCATGGAACGGGCGCCGGGAGAGTCAGGGAGACAGAGTCCGAGCGGGCTCGGCCCGGTGAAGGAGCACGGGGTTCTGTTCCAGTGCCAGCCCGAGAACTGGACCGACCAGAGgaagcccccccccaccctgacCTACTGGGTGATCGGGAGGATGATTCTGGAGCCCACCCCTCAGGAGTTCTACGTGTGCTTCCACGACTCGGTGGAGGAGGTCCCTGTGGAGATGGCCTTCAGGCTGTCCTTTGGCCTGGCCTTGCTGCAGAGGGGCGTCCCGGTCCGGGAGCAGCTGTACCGCTTCAGGTTGGGGCAGCCCGTCACGCCGCAGCTCAGCGCCAGGGCCGGGGGCCGGGCGGGGGCCGGGGCCGGGGCGGGGACGCCCTGGGGGAAGGAGATGGCCGCGCCCTGGCAGGAGTCGGAGTAG
>TU118260
CGGAAGCGGCTGCAACATGGCGCCGGCGTGTCAACACGGGAGTGAAGCGCAGACGCGCTAACATGGCTGCAAAGGACACACACTCGCTGGAGTCCCCCTTCACCCTGGACCCCTACAGGGAGCgggaaggggaggaggaggaggaggaggagggcagcagcagcagcagcagcagcagcagcgactCCGGCTCCAGCCGCTCAGACTCAGATGACCTGGAGCCGGAGTGGCTGGACGACGTGCAGAGGAACGGGGAGCTGTTCTACCTGGAGCTGAGCGAGGGCGAGGAGGAGGCTGCTCTGTCCCAGGCCGCCGCTCAGAGCCCGGCCCCCAACCACGTGCGCTTCAGCGAGCAGGAGGCCGAGATCATCCCGCACGGGGGGCCGCCGAGAGAGGGGCCCAGGCCAGAGCCCCGGCTCAAGAAACTGGCCAAGATCCTGAGGAGGAAGCGGCCATCCCGGCGCGGcggagacagacagggaggcCACGGCTGCCCGTCCTCCTCACGGCCGGCTTCCATCCTCAAGAGCCAGCCGGGGCCCAGGCCGGGGCCGACCCTGCAGCCGGCGCTCAGGGATGTCTGCGTCTACGTCAACCCCAAGAGGCTGACGGGCGGCGGGGCGGCCCAGGGGGGATTGCTGGAGGCCTTGATCGGCATCCTCCACCGCCCGGTCTGGGACAGGAAGCAGGACGGCCAGGGGGAGGAGCCCAGCGCAGCCAATGAGGAGGAGAGGCTGGCCGTGCACGGGCTGCTGCCAGGAAGCCCCGCCCTCAAGTGCGGCCAGATTCTGATTGGAGACGTCCTCATCGCTGTCAACGACGTGGACGTGACGTCGGAGAACATCGNNN

Function

GO: NA

KEGG:

id description
K22862 INTU, CPLANE4, PDZD6; protein inturned

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018012 True 3030 mRNA 0.69 17 32407452 32425235
TU118260 False 849 TUCP 0.68 3 32407429 32411373

Neighbor

gene id symbol gene type direction distance location
AMCG00018010 NA coding upstream 4672 32391242 ~ 32402757 (+)
AMCG00018005 rap1gds1 coding upstream 61469 32317696 ~ 32345960 (+)
AMCG00018003 NA coding upstream 122318 32252830 ~ 32285111 (+)
AMCG00018001 NA coding upstream 168541 32237411 ~ 32238888 (+)
AMCG00017997 NA coding upstream 178738 32218709 ~ 32228691 (+)
AMCG00018014 NA coding downstream 304 32425539 ~ 32428759 (+)
AMCG00018013 NA coding downstream 3999 32429234 ~ 32439006 (+)
AMCG00018011 NA coding downstream 17308 32442543 ~ 32460757 (+)
AMCG00018019 NA coding downstream 164940 32590175 ~ 32592904 (+)
AMCG00018018 NA coding downstream 168937 32594172 ~ 32601494 (+)
G94792 NA non-coding upstream 57066 32347462 ~ 32350363 (+)
G94763 slc1a1,LOC107691854,LOC107561518 non-coding upstream 170238 32233771 ~ 32237191 (+)
G94739 NA non-coding upstream 242132 32164819 ~ 32165297 (+)
G94713 NA non-coding upstream 314385 32091420 ~ 32093044 (+)
G94681 NA non-coding upstream 507749 31898502 ~ 31899680 (+)
G94858 NA non-coding downstream 91888 32517123 ~ 32535900 (+)
G94899 NA non-coding downstream 321589 32746824 ~ 32762583 (+)
G94906 NA non-coding downstream 369520 32794755 ~ 32797498 (+)
AMCG00017978 NA other upstream 1575562 30819869 ~ 30831867 (+)
G94275 NA other upstream 2957082 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 3760679 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 4710050 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 5409977 26992891 ~ 26997452 (+)
G94838 clcn3,LOC106577864 other downstream 36063 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 82455 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 364206 32789441 ~ 32793604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location