G90475 (LOC104962440)


Basic Information

Item Value
gene id G90475
gene name LOC104962440
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5088593 ~ 5098887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112786
gcaggaactgggagactagtcaggatcgagggaaagatgaatgcagagacatccttgatgaaaacctgctccagagcgctctggacctcagactggggcgaaggttcatcttccaacaggacaatgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtaaatgtccttgagtggcccagccagagcccagactcgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgacactccccatccaacctgatggagcttgagaggtcctgcaaagaagaatgggagaaactgcccaaaaataggtgtgctaagcttgtagcatcatactcaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC104962440

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112786 True 366 lncRNA 0.50 2 5088593 5098887

Neighbor

gene id symbol gene type direction distance location
AMCG00017457 NA coding upstream 40351 5009181 ~ 5048242 (+)
AMCG00017454 NA coding upstream 187930 4884961 ~ 4900663 (+)
AMCG00017451 NA coding upstream 220123 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 396638 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 454983 4628215 ~ 4633610 (+)
AMCG00017456 NA coding downstream 133581 5232468 ~ 5272687 (+)
AMCG00017464 NA coding downstream 231869 5330756 ~ 5351825 (+)
AMCG00017463 NA coding downstream 256875 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 274470 5373357 ~ 5375454 (+)
AMCG00017465 NA coding downstream 279572 5378459 ~ 5379148 (+)
G90436 NA non-coding upstream 177801 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 378519 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 698052 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 758010 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 776118 4312258 ~ 4312475 (+)
G90551 NA non-coding downstream 306555 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 308761 5407648 ~ 5412689 (+)
G90554 NA non-coding downstream 312844 5411731 ~ 5412261 (+)
G90561 NA non-coding downstream 341325 5440212 ~ 5463064 (+)
G90647 NA non-coding downstream 578014 5676901 ~ 5677244 (+)
AMCG00017446 NA other upstream 400370 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 482022 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2393140 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4876657 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4990196 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1630851 6729738 ~ 7188643 (+)
G90877 NA other downstream 2569296 7668183 ~ 7671850 (+)
G90881 NA other downstream 2593698 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2707491 7806378 ~ 7813639 (+)
G90955 NA other downstream 3033481 8132368 ~ 8132854 (+)

Expression


Co-expression Network