G93350


Basic Information

Item Value
gene id G93350
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24034696 ~ 24037610 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116446
TTATATATCCATAGATGTTTATTAAATGATATCCAATAATACAATATGCAGGAATATTATAGAATACAACTGTATAGACTTGTGTTCACAGTTTGATATGACAAAATGTCATTACAGAATTCCCATTGGACTACCAACCTATAAGTCTGCCAGAAATATATCGTTTAGTACAAACTGATATCTGTAGTATAACAGTCAaccaaaatacagtatttttgtgATAAATTGAATCAAAATCTTGCTAAAACCTTACTTGCCCGTTCAGTCTTAttaattcaaaaaatatattacaatttgtggtataaaaaaaatctgcacagTTTTATACaggtttaaaaaatgcaaacaggtGAAACCAGAgataataagaaatatatacaccTTTGGCCATGCTGGAACTGTTATGTTGCAGGATATCTTTCCACAAGACTACAAACCACTGAAAAAAATCACAGACTTAAtaagttttggttttgttatccATCTGTGTATACTCCCAGCTACTGTTAAAAGTACAAAACctattaaatacacaatgacTACATCTAAGGCATCAGTctatgaaaaaattaaaagcgTGCAACAACCTCTCATTCCAAGTGGTCTAGAGACAACATACTCTACTTATAGCAtcaaatattgtaaatgttttagtgATAGCACTCCTTGAAGCCTGGGGAACTTAAAGTTGGATGATTGAAGCATATCAAAGAATGAGGTGCATTAACAATATTTTTGActttaaataaagtgcagaaTAATAGTGTCAATATTATATAGGcatctctttttaaataaagtccTCTCTCATTACCtaacaaatcaaatacattttaaaaagaaaactggcagacacacacagaagtCATGCAACCTTCTCTCTGCTTAGCATCTCAGTTTCACCAAAAGGAtaagatatacatttatattgcatcCCAAAACCAAATTGAATTCATCAAAACAATAATGCCCAGAAAAGAGTTCACATTTTGACAGAAAAGTCTGCTGTCTGCCTAATGACATATCCACATTCCCTATGTACAAATGTTTACTAATTCACAATATCCCTTTTGCCctcttaaaacaaaagaaacctcTCACTGGAGAATACAGAGTCGGAAGCTGTATAATACTTCACCCCATAACAGAGCATTTCAAAGCAGGTTGTAATTCAAAAACAGACGCGATTCTCCAGACCGTGTTAATGCTTTCCTCTGTCTGTGCATCCACAGCAGTATGAAGATCACTGTGTAAACGAGATCTCGatatttaaatcagtttataaaaaatagaaatggcattattattgatgtacaaaaatatataaagtagaTGTAGGAAAGACTACTGCTGAGGTGTTGATCATGTGGTGAGATTGAGGGTAAAGGCTGTCATTTATAATTGTTCCTCACAGCTTTCAATTAGGACAGAGCAAACAACTatgacacacataaacacaactGGATAATCAAAGTGGTTTAAAAAGTCCCTTGACTGGCTCGGCAGGGACACTGGGATAAAGGATGGGTCTGGAGGTGAGTGGGCCCAAAGTTTGACATCTTTGGTGTTTAAAGTGACCTTAAATTTGTCGAAATCGCCTTTTTATACATTGAATTTCACAGCTGGTCGATGGAATTTCGAACACCACTGTCTATTGAGTAACTCTTTGGGATTTTTACTGTGGCggtaacattttgtattattactattaatttattttagtttatttgagATTTTATGTTGGCAAAATGACACTTGCAgggttaaaaacacacaaacaaaacgtATAAAACTGGAATATGAACTTTATAGCAGCCCTTCCCAACATGATATACTATATTGGGTGCAAAATATGTCTGAAAGGCAAACACCTTGGTACATTAGCAAGAAGACCTCCATGCAGCCCACCGTCTATCCTGTAGTGTCCTTAAAAACGATTTCCCCTGGACTTGTTGGACTCTCCCTTCCACAAACACCCCACAAAGGTTACATCAATGATTCAGGTCTGCCCAATGAGAGGTCTGTGATTGAAATAATTAACTTAACGGGATTAGCAAATGGATTACACAATGGTTGGAAAAGTAGCTGGTTTTACAAGCAGTGGTGTCAGAGTGTAATAAGACCTTCAATGTACTGTGTGCCTCCCCCTAgaaaggacatttatttttgttttgttttcaaattaagtaACTTTCAGGGTGTCCAGAAGTGCAGATCATAATATTGGTGAcagtttaaaatggaaaactaaCCAGGATTGATTGTATTGGtttcattaaaatcaaaaatCTTACAGCTGGCTTTAACAAGCAAAGCTGGCATCTAAGAGTATTTACATGAGGGAGGCCACAAGTACATCtaagtgtacatatacatacatactgtgtgtgtgtgtgtgtgtacatacacacacacacatatacatacacagtatatatttctGACCAGCTTGCAAATAACTCAGCCTCTCATAAAATATCACAtaagattatatattaaaaaaaaaaaaaaaaaaaaaaaattcacattATGCAGGTGTGACCCGAGGTTTTATAAATACTAAGGAGCTATCTGTACTACATATGGACTGTGTGGATTGACTGCTCTAATCATCTGTACAGAGGCCCATGATGCACCGCAGCAGTGGCTCAGACCAGCTGAACCGTGGTGCGGACAGTTGTGTGTCAGTGGCTCAGACGAGTAAGTGCCTCTTCTTGTGGAGAGCCAGGTGGTCAGAGCGCGAGAAGCTGCGCTCGCAGTCCGGGCACTGGAAGGGCTTGATGCCGGTGTGCTTCCGGAAGTGTCTCGTGAGCTCGTCGGAGCGGGCGAACTTCCACGTGCAGCCATCCCACATGCACTTGTATGGCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116446 True 2871 lncRNA 0.37 2 24034696 24037610

Neighbor

gene id symbol gene type direction distance location
AMCG00017812 NA coding downstream 140751 23885184 ~ 23893945 (-)
AMCG00017811 NA coding downstream 150242 23875123 ~ 23884454 (-)
AMCG00017804 NA coding downstream 171040 23857838 ~ 23863656 (-)
AMCG00017806 LOC108277608 coding downstream 194533 23821734 ~ 23840163 (-)
AMCG00017808 NA coding downstream 222248 23795913 ~ 23812448 (-)
AMCG00017815 tmem33,LOC107741195 coding upstream 11212 24048822 ~ 24053932 (-)
AMCG00017818 limch1 coding upstream 81867 24119477 ~ 24253084 (-)
AMCG00017824 NA coding upstream 402926 24440536 ~ 24568029 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding upstream 553407 24591017 ~ 24596789 (-)
AMCG00017828 rhoh coding upstream 573819 24611429 ~ 24612007 (-)
G93324 NA non-coding downstream 124017 23907575 ~ 23910679 (-)
G93173 NA non-coding downstream 494576 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 704952 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 738450 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 739327 23294819 ~ 23295369 (-)
G93355 NA non-coding upstream 6584 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 263810 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 467772 24505382 ~ 24505610 (-)
G93500 NA non-coding upstream 639555 24677165 ~ 24679900 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding upstream 688328 24725938 ~ 24730222 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 712742 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3676071 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4615340 19412987 ~ 19419356 (-)
G92436 NA other downstream 5571520 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 6244947 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 227069 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 908485 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 959934 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1907531 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1974878 26012488 ~ 26015942 (-)

Expression


Co-expression Network