AMCG00018305


Basic Information

Item Value
gene id AMCG00018305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7737626 ~ 7746484 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018305
ATGCTAGGCAGATGGATTGAAGACCATGGTGTTGTGCACAACATGATGTTTAACCCGCAGACCCTTCTGAAAGTACCGCACAAGAACACTCAGAACAGATCCGAATGGTGGGACAATGGGGTCACGCCATTGTGGATCACCGCTCAGAACCAGGCGAGTTTCCCGTGTTTCAGTATTTCGCTGGGACTAAAAACAGCATCCTTCCACTATCCTGGAGGGGGAGCCAACTTCAGCGGCCAGACAGTCAACAGGGCCCTGGTCGAGTCTCACTCGCACCCCGACTCTAATGAGATGGAGTGGCGGGAGAACATTGACACAGTCATGGGCTGGTTCACCAAGGAGGACTTTGACTTCGTCACACTCTACTACGGGGAGCCGGACGCGGTGGGGCACGCAAAGGGTCCGGAGACGGAGGACCGGCGTGCGATCATCCGGCAGATCGACAGGACCATCGGCTTCCTGCTGGAGGCCATACGGCGCCACAACCTGATTGACCGTCTCAACCTCATCATCACCTCCGACCACGGCATGACTACCATCAAGAAGGCGCCGGCTGTGGAAGAGATCAAGCTGTCCAACTACATGAACTTCATCAAACTGGTCCACTTTGACATTCTGGACTACGGGGGCTTTGGCATGATCACACCCAAGGCCGGCATGGAGGAGCAGGTGTACCTGGCCCTGAAGAATGCTCATCCACACCTCCAGGTCTACAAGAAGGCAGAGCTCCCGGAGAACTTCCATTTGGCCAAACATGAGCGGATCCAGCCCATTATCGTCATCGGGGATCTGGGTTACAATATGAACTCAAGAATCATATTTTACGTCAACAAAGGAGACCACGGCTTCAGCAATGAGGAAATGGATATGAAAACAATCTTCCGAGCATTTGGCCCCGACTTTAAAAGGAATTACCTCGCCGACCCTTTCGACAGTATCAACATCTACCCACTCATGTGCAAACTTCTGGGTGTGATGCCGGAGCCCCACAATGGTTCCTTGGCGGTCACAGAACACATGCTAGTGGGCGATTCTGATCTGAAACCTGATGGAAATGAAGATGGAATCCAGCAATCTGCAAACGCTGTGCTAGCAATCTCTTTATGTGCCATCCTTGGCATTCTGGCTTTAATGTTTATCACTTATATGAGCTACACGGTTTACCAAAGGAAAAAAGCGTCGAGAGCCCAGACTCAAGCCCAGCCAAGCGGTGAGGATTTGAAGGCCACTACGTTCTGAGTCACAGGCTAAAACGCTCTGGCATTGAAACTTGGAAGAAGAGACATTAgacattacagtaaaatacttaCATAAACCTCGAGGTGATGctgatcagaaaaaaaaaaaaaaacgatatcCATTGTTTCTGAACTTCAATTCAATCATGATAAACCAGAATGATTTTCATGATCACAGGGATGAATAACGGTGTAGACGTTATGggtttgttttatacaatgtctcaagaaaaaggaagacagacagattTTTGTACAGcatggaaaattattttaatattaaaaaaaatgttccagtttgtttttgttactacCTGCTGCTAAATAACCATTTGCGCTGCCACAGACGGAGAATATACAACTATTTACATAAAGTCAGTGAGTCCTTGCAAACAGCTCCTGCGAGGTTTGACTTTCATTTCAAGTGGAACAGATGACTGGGAAGCCATAGAAACCATCTACACTACAGggctgttactgttactgtaagAAACGGTCACAAATGTATTGGATAGGGATCTATACTAAAACTAAATCCAAGAATAAGGTGGATGAACTAGTCAAGGCCTCAACTAAATAGTACAGACTGGCTCTTGCAGTTTAGAGACAGCTGGTATCTTAACGGGCCAAAGTATAGGTGGATCACCAGGATTAGCTGCCCTCAGAGTTGGCAACGATCTCCTCTACTTGCCCCTTATGCTGCCCAGGGGGTCCAGGAATACGCAGTGTTCGGTCCGGTCGGTGGCCAAGCTGCATGTGTACTGTGTAGGATGAGTTAATCATAGTACATACGGAATTATTGTAACCGGggaaatttatatatatttttaaactgatcCAGGAGGGTGGGGTGAGAAAGTAGATTCATAAAATTGGCatcactctgtctctgtccctctgggCATTTAAGTACTGGACAGAACAATTCTGAGCTAGTGGAATATCTAGTTGGATAGAACGTGCATTAGTTATTTCTCTCATTTAGGAGATTGAACAGCAGGAACGCATATGACACAGTGCAGAAACAAAATGCCTGTACAGCATACATCTGAAATGAAACCAGCAGATTTCCCAATGCATtagaaatgaataaaacattaaacatgaaaattaCAGCTCAAATGACATTTGAATCGCATTATTCGGTAATAAAGTAACAATTTAGCAAATTCAAGAAGCATacaaagattacaaaaaaaaatcccaaagacgtgcattttaaaataaaacattgtagtCCACATAAAAGTGGAGAGATTGccatttcattattgttataattttcaTTATAGGTGAACAGAATGCATTTCAGTTTAGCATCTAAGTCAGTCTTTTCAAAagacaattataatatttagtttgaaaCCAGAACTTAATGTATGAATTAAGTTCCAGAGAAATCATGCATCacctacatttcatttttacaccAACAAAAGACGTTGCCTTAGGGCTTGCATTTAAGGCCTTTAAAATACACTATATTGCAATTCTTTCCATTGGCATTTCCTCCTATTGTCTTTGGACTACAATCCTAGgagatatttgttttcttaaacatttaaaacagtctCATCCAAGAATATGCTAATGAGTTACAAGGAGCTATAATTTCAGAGGAATATCCCTGCTAATCACAAAGGAACGAGACCAATGTCAGCACCCTACCCCAACCTCCAAAAGCACTTTTGATTAACAAATTGCGTAACAATCATCTTAGACAAACACCTGAATAAAAGCAGCTCCCCTGCATTTCAATACGCATGTTACATCTGCAATCGGACTGAACCTGAAAGAGCGTTCTCAGTGTAATGCGTCCATTGCAGAGTATGTAAAGGGTAGGATTCGAAAAACTCTACTGGCACAATGTGCAATTACCTCCTCCTAACTAAACGTTTATGGCCGTCTTAATTGAggcagaaaaatacagaaacatctGGGCCATTTTGGCAATGTCTTCTCTGAACTCCAGACCTTGCCAaggacaataatacaaataaaattatcaTTAGATCAACGCTTaaatcttgttttattaattgttaactccataaatatgtatacatgtgcatatatacatgtacacatacGTACTGTATTAgaaatatattagaaaataaactaaaaccggAAAGGGAACGCTTCAGTCCAGGTTTCTCCCGTCTTGGGAATGCTATTTGGGAAGGGCGCGTTCTCGCAGCTGAGGGAGGGTGAGTGTCTCTGGGGCGGATTTCTTTCGGGGCCGATCCTTGGGAACGCTGAGGAAGTCCGGGGGGTCTCCGTTCACAGGGGTGGAAGGTGCGCTGGCCGGGGCGCTGCGTGTGGTGGGTGGCTGGGCGACCTCGTGGATGGAGATGGTGGGCGCCATCAGGCCAATTTTCTCATTGGTGGCTTCTTGCGTCTCTCTCTCGTACTCCCGGACCTCTTCCATGGACATATCTGGTGGAGGGTGGGAAAGGACATCAGTTATGGTCCTTGAAAGGGGGATATTCGCATTTTATACTCCGTTACCTGTTCTTAGTTATGCATCGATCACAAGGACAAGAAAAACGAAGGCAGACATGTTCTCCTTTGGCACATTAGGAGCGAACGTCAGGAAGGATAAACCATGGGGGTTACATCAGGGCTGTGCAGGATTTCCCTGTATACTTTAGAGGAATTCAAAACACTTACCGAACACATCTCTCTGGGACGAGTCTGAGACAGATTAGTTTGAACACTAAAGAAAAAATGGCAAATCACCtcaagaaaacacacagaaaaaattctgaaaacaaaaccaaaaaaacaagacGTGCACAAATCACTtcacagtaatacaaatatcgGAAGCACAAAATGTTGTTCAAGGTGGTAACGAAAGTCCAACATCAGCGGTCTGTAATATACCTATGGGATTAATGCACGGTTGACGTTTTAACTGCAtattgaagtaaaaaataagtGCTATATTTCCCCATTAGATGGCAGTATTGCCCAGTGTTCACCTCTAATACTGTGAAACATGAGACAAGGTATAAAAGCAATCAACATCAACATTTTCCACAACAGTTCAAGAAACAATAGTTAAAAAGTTGCATAGTGGACTGCCTATATACTGAACAATATTCCAACTGGGAAGTAGGTATATTGTACTGTTGAAGTTTCACATTACATTACTGAGAAGCATGTAAGCTTGCTTTGATGGCTCATCAGTCATTAGACATTCTTTTTATTGTATGGAACCATTGTGATAAAAgtctcattaaaatgaattgtcCCTTTAACACTATCATTTTCATTAGATTAGAAAGTGTAACTCACTGTATTCATGATATGAATAtgaactttaaaatgaaataaaagatgaCATACATTGGCAGGGTGTCAGCTATGTCTCTTGGTATCCCAGTTTTTGATTTGTGGCCACGTGCATCTGATTCTCGAATTTACGGACGTCCTCCAAAGTCATGGCTGTGGAGAATTTCACATTATCCGCTTGCCGATTTCACATGCATTTGCGTCACCAAGTTAAAGTCAAGCCTTTACATCCATTCCATGTGTCCCCTGAATCATGAGCGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018305 True 4800 mRNA 0.43 6 7737626 7746484

Neighbor

gene id symbol gene type direction distance location
AMCG00018300 NA coding upstream 837958 6883935 ~ 6899668 (+)
AMCG00018294 NA coding upstream 908886 6827691 ~ 6828740 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding upstream 918855 6815434 ~ 6818771 (+)
AMCG00018297 naa60 coding upstream 939401 6792054 ~ 6798225 (+)
AMCG00018295 NA coding upstream 947163 6785250 ~ 6790463 (+)
AMCG00018308 NA coding downstream 57755 7804239 ~ 7814791 (+)
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding downstream 98983 7845467 ~ 7878193 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding downstream 303926 8050410 ~ 8074161 (+)
AMCG00018313 NA coding downstream 328194 8074678 ~ 8078774 (+)
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding downstream 336488 8082972 ~ 8089974 (+)
G115560 NA non-coding upstream 16662 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 650660 7085574 ~ 7086966 (+)
G115514 NA non-coding upstream 898765 6837706 ~ 6838861 (+)
G115511 NA non-coding upstream 904314 6829088 ~ 6833312 (+)
G115467 NA non-coding upstream 957580 6733707 ~ 6780046 (+)
G115585 NA non-coding downstream 136721 7883205 ~ 7890901 (+)
G115591 NA non-coding downstream 151456 7897940 ~ 7898180 (+)
G115640 NA non-coding downstream 347716 8094200 ~ 8094449 (+)
G115679 NA non-coding downstream 547932 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 605593 8352077 ~ 8372827 (+)
AMCG00018280 NA other upstream 990188 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1577010 6155488 ~ 6160616 (+)
G115299 NA other upstream 1786609 5949463 ~ 5951017 (+)
G115049 NA other upstream 2973721 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 3133521 4594933 ~ 4604105 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 147143 7893627 ~ 7894449 (+)
G115648 NA other downstream 373294 8119778 ~ 8122171 (+)
G115789 NA other downstream 946880 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1453173 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1493327 9239811 ~ 9245234 (+)

Expression


Co-expression Network