AMCG00018317 (rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266)


Basic Information

Item Value
gene id AMCG00018317
gene name rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8097388 ~ 8114190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018317
GGAGATGGCTGGTGCGGAGCCGTGTTGAGACGAGGAAAGTGGATCGTGTAATACATTCGTGTGCATTTGGAAGTGATTGTTCCTTTGAAGACCTTATTTGAGTCCATTTTACACCGTATCGGACAGAAGAGACGGGTCCCCGGCGAGTTGGTTTGAATGAAAGGAGTTCCCGAGTGTTGCAGCCGAAGGCCTGGACGCAGACCTCGGTGTGGAAGTAAGGACGGATGCCGGGTAGCGAGTGCATGTGAGCGGCGAGAGCAGCCACGTTTAAGGCTTCAGTCTTTTTCTTTGGATCGAAGTGGTGCGTGATAAGGTGTGCTGAAAAAGCGACTGGAAACCAAATCAGCGAggcaaagtatttattttattgacgtTTTGGGttcatttggttttgttttcttggtttttgATGcattattatatgattattgCCCAGGTAGTCAGCTATTACTAGTCGCAGCAGTATTGCTGTGGTAGTCTTCCTTGACTAGCCAATTCAGCGTCACACGGGATGATTAACGTGTGTAATTATCTGTTGTTTTACACAGgagataaataaacaacaaaagagATCTGCATATTCAGCCTTTCAACACGAGGGCGTCATTTCTCGGCTGCTACACTGTGATCTGCGATGCTTTTCCCTCTAACGATTGCGGCCCTTTTTCCTACCCAGATCGGACACCAACATTTTCTCTGCTGTTGATGGCGAGCTGTCTTGAAACATTTCCTCTTGAAAGACTTTCGTTGTGGACACTTTAACCCCAGACTGAGAACAATGCAGCCTTAGACCCAGCCAAAGCATCCGCGCATCATCGCAAAAACAAAGATGTGTTTTTCTCCTGTAGGGAGGGGGCCACTGTTGGACTGCAGTCTGCATTTCATATCCAGGTTTTTCGTTAAGCggcaattatgtatttttaatggaagGTCTGCTCAAATCTAACTATTTTTAACAGATGGTGAGCTTCTGGGAGGGGTTACACATTTGTTCCACATTAAAAACCAGTTTGCTGGTTATTTGCTAGTGGCAGGAGCAGTTGGCCTCGCATCagaagataaatacattatatttgctTAAATATATTAAGTGACTTGGCATGCAATACAGAAGTTGATTGCTTCTGGTTtgcccttttttttccccctccaaaAGGTATTTCACCCTTGGTAATCATCTCAGATTTTATAAGGTCAGGGGAAAAAGAGATTTCCATCATTAAAGTTTCCTCTCTTATGTCTACTATACTGAGTTGGAAGCCAAGGTCTTGACAGGTATCCAAAGGCTTCATTTTTGTGAAAGTTGTTGCACTTTTCCTGACTTGACTTTTCCATTATCCTGCACTTCTGTGGATGTACTCAAGAGGACACTTCAGACTTGCAATAAACTTGGACCATTACTGGGTAGCTGCAGTTGGGGGTGAATGCAGTGAAGTTGGCTGACTTTTGCTCTGCAACTGGACCAAGAGCCACGTGCTACCAGGAGAGATCTTTAGGGTTGCACCCAGGTCTCCAGGCTCGGCTTGGCACCAATGAGAGGCAGGATGGGCACCCAGGGAAGTCCTGTCAAGAGTTATGACTATCTCCTCAAGTTCCTGCTGGTGGGAGACAGCGACGTGGGGAAAGGAGAGATCCTTGACAGTCTGCAAGATGGGTCCGCGGAGTCTCCCTACGCTTACAGCAGCGGAATTGACTACAAGACCACTACAATCCTGTTGGATGGGAGGAGAGTCAAACTGGAGCTGTGGGACACGTCAGGACAGGGCCGGTTCTGCACCATCTTCAGGTCCTACTCCCGAGGGGCACAGGGGATCCTGCTCGTGTATGACATCACTAACCGCTGGTCCTTCGACGGCATCGACCGCTGGATTCGAGAGATCGATGAGCATGCACCGGGCGTGCCGCGGATCTTGGTGGGGAACCGGCTGCACCTGGCGTTCAAGCGGCAGGTCCCCACGGAGCAGGCGCGCGCCTACGCCGAGAAGAACGGCATGACATTCTTCGAAGTGAGCCCGCTCTGCAACTTCAACGTAATCGAGTCCTTCACGGAGCTCTCTCGCATCGTCCTCATGAGGCACGGCATGGAGAAGTTCTGGAAGCCAAACAGAGTGTTCAGCCTGCAGGACCTGTGCTGTCGGGCCATCGTGTCCTGCACCCCGGTGCACCTCATCGACAAGCTTCCCCTGCCGGTGGCCATCAAGAGCCACCTCAAGTCCTTCTCCATGGCCAACGGGATGAACGCAGTCATGATGCACGGACGCTCATACTCGCTGGCCAACGCGGCCGGGGGCAGCAAGGGCAACAGCCTGAAACGCTCCAAATCCATCCGGCCGCCCCAGAGCCCACCCCAGAACTGTGCCAGGAACAACTGCAAGATCTCTTAGCATGTGGCCAAGGGCGCTGAGCCCAGGACTACCACCTTAGACAGGCCAGAAACTGAACCCccctacaaacacacaaacacttacaCACCATCCTGCTACTACGATTCCACTCGTGTGAACCTGGCGAGAGCTGTGTAGACGTCAGAGATCCAAGCTTCTCCCTCTGCGGGGTTTGAGGGCGGCCCCCGATTTTGTCCAGGATTCATGCATTTACAGCAGCCAGCTGGAATTCACACGGACCCCCGCTCCACCCAGCACTCTATGGGCCTGGACTACATTtgacttcattttttatttttatgtgtatatacacacactatttaACAAACATTTGAAGACACACAATTAGAcagatggttttgttttggtttttagaTGGGGGGTGGATATAAACCATTGCACTGGAATCCCTCTGTGCGCCGCCTAGTGTGGGGTGTTGAAAATAGAAAAGGGACGTTTTGCCTCGTTGGGGAGAGAAGCGCCAAGACGGCCACATGAAATTCAAACATCTGCCGCACCCTGTTGCCCTCACGGGTGTTACAGAGGTCCTGCTGGCCCTCACCGTGGTTAGGACTCTACAGGGGTTCTGGACCTGCGTTTCCTCTTTCCTTTATTCATCGCATTTGACCGGACTGTGAAACAAAGGTGCTGCTACAAGACAAGCTTCTTTCCCCATTTTGTTTCTGCCTGGTctgttcagtcttttttttgtttaggtgTTCTCTCTGTTATTGCCCCCCCCCTTTACTTGACCTTCTCTGTACTGAGCGCTTCTCACTCCAGGCCTCCACTGTTTATGTGCTTCCTGAATCGGAAACCCCAGTGATCATCTGCACCAGATGAGGTCGGTGGGGtgtgattaaaaaatgaaagatggACGGTTATGGGCAAGGCCAGCTCCCAGGGTCAGTGTGCTTAATCACAGTTGGGTTCTTTTTGAATCAGACCCTTCCACAGTCAAAGCTAACTGGGGTGCCTCAATTCCAAAATGATTAAACCAAATAGATGCGTTTTGCCCATCTTAAATAGCCCGTATTATTAATATCCAGATTCTCGATCAAACCGGCCTCTTGAGTTGCAAGTCCCTGAAAACCAAATGTTCCTTTTAAAGAAACCGGGCTCCTGCTTTCACATCCACAGCAGCTCGGGGTCCAATCAGAGCACAGACCCGGAAACAGACTCCACAAGGTGGGAAACCCCGATCTGAATCTGTCCGCTTATCCTCTCGCAGCACTGCCGCTGTCAGGCCTTAACATCGCATGAGCCGCAGAGCCGGGCCGTTCCCCGCTGTGGAAGGATTTGCATATTCAGAGAAAAATCGAAACTACGAGGCGGTCCAAGTATAAGCTCCATCGGGTATTTTTATCCAACCAGAACAATGTTTTAGTTGAGTGCATCTCTGTGCTCCCTGCAGGGCATCACACAGACTCTCCGGCCTGTGATTAAACACACATGTCCTAACTGGAGACGCCCCCTTTGTCTGGGTTTTGGGTCAGGGGAGCCGTTCTCATCATCAGCGGTTTTCTCCCGTTCTCTTTGGACGGCATCCTATTCCCCTGCAGGCGACAGGTTTAAAATAGGAAAGGCTGCTTAGGGCTCCTTATCTGGGGCTTCACTGAAGACTCTTATTGGAGAGTTCAGCgtctacacacaaacacttggGAGAGTTTATGCGGTTGATTTAACTTGCCTTACAAATGccaagttttagttttttgtttgtttgttagtctGGGAAAGAACCCTTCCAGTGAATATGATTCCGGCTTAAAAGCCTAGGCTGAGGTGAAGTACAGCCCTGTAAATTAAAACCAGAGTTGTATAGCTGCCCCTGATTTGTCTCCTGTCCTGTGGTGCTCTGCTGCTCATATTTGCCATCCGTTTCCTCGTGCTCTCCCAGCAGACGCCTGCTTTTCAACGCTGCCTCCTTGTGCCAAACCCCACTTAAAACACATGAAGAAGAGCGCATAATCCCTGCTTATCCTTCAGCATTTAATTGTATCGCATTGATGTGCTGAGAACAACCCTCAGGCTGGCTGTGCTTCTGTGTTGCGTTTCTTATGACTAGTCAGGGGACGCTGTCTGAGCTTTTTCTCGAGTGAAgtctaaaaatacatgtatatatttgtgttgttcagTCATATTTCTGTtgataaaaatggaaatgaacaTCAAGGTTAAAATAATTCAGTCCCAGATACTTTCGTGAAGGATTACTACTTCCAAAAATACGTATTTATTTCGAAAACTCATTCAAACTGTGCCAAAATGAAACCGAGATGAAAGGGTAGAGGAGGGTAAGATGTATCCTGTTGTATTGCCCTTAGATCTAGCACAGTCTCCCAGAAGGCAACATGAatacgtttttctttttaatatgcaACCGCAGCTTTCAGGAGTTGCTCTTGCAGTCCGAGTGAAAGGCATGCCTCATCCCAGTCCAATAAGGCAGTACAGACTTTCCACAGGGGTCTGGTGTAGTATGTACACTGTGTCGTTAGTCCCCCCCCTCTCCCGCTTCAATCTCAGGGACCATCTGAGGCCCCTGGAAGCCCCCCCAGCAAATGACGCCTGGCCCATGCAGGCTGAGTGTTGGATAGCTTCCAGGGGCTACTTTACTGTCTTCTATTGTATATTTGAAAGTAAGTGTCGGTgtgtcagttctctctctccGATACCTGTTTGTAAGGACGCATTCTACCACATGCATAGGAAGATCTGAAGTGTTTGTGGTTCCGTGACTGATTACCTCCTCGGCACACTAATGGGTCTCTCGAGTGACAGTACACTGCTAGCTTCAGTTTAGGGAATCTGGGTTTTCAATGCACTACAGGTGCACCAAGGTCTGCATACATTTGACTGGACGGCAAGGCAGGGGCGTTTGAATACGTTCCCCCGTCTCTTCATATTTAAGTGTGTTCCTCGTTTAAGGAGACGTAGTTGATCATTAGTATCAAGATAGTAAGTCAACGCGACACAAGCTGTCGTGCTTGTAGAGAAGCAGCTCTTCAGCACCCGGGTCAGgttttttgggtttttttgctattgttttttaatgacacGTCCCCTTATCGATCCAAaatgatgtgcttttttttggttAGCGGTGATCATTGTAAAGGGAATATGAATTGGGGTTTACTGATAGGATGAGCCATCGGTTCAGCAGTTTATCTACTCCTTCCTTGCAGATGTGCTGGTAGGGAAGctgcagctgttttttgttttgttttttgaagtaCAGCTGGTCCAGTCTTTTCTGTTTACTTCCCTTCCATGGGTGGATAAAGGGAAACATGTAAtgctattattttaatattgttattatgattcaAATGTAAACACTATTTTCCTTTGGTTTAAGCTGCTGGGTAACTTTAATGAAGAATGCTTTTTTTGTAagtgttcttaaaaaaataaaactttttaattaatattattattgattgtacaGTTATTATGGTCTATGAAAAGCAAGactttttcacaataaaacagttaacagt

Function

symbol description
rab40c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in central nervous system; cranial ganglion; forebrain; and retina. Orthologous to human RAB40C (RAB40C, member RAS oncogene family).

NR:

description
ras-related protein Rab-40C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018317 True 5890 mRNA 0.47 6 8097388 8114190

Neighbor

gene id symbol gene type direction distance location
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding upstream 7414 8082972 ~ 8089974 (+)
AMCG00018313 NA coding upstream 18614 8074678 ~ 8078774 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding upstream 23227 8050410 ~ 8074161 (+)
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding upstream 219195 7845467 ~ 7878193 (+)
AMCG00018308 NA coding upstream 282597 7804239 ~ 7814791 (+)
AMCG00018318 NA coding downstream 1879 8116069 ~ 8118432 (+)
AMCG00018321 NA coding downstream 25817 8140007 ~ 8150550 (+)
AMCG00018320 LOC104942092 coding downstream 40620 8154810 ~ 8167750 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding downstream 175811 8290001 ~ 8315541 (+)
AMCG00018324 NA coding downstream 235921 8350111 ~ 8351371 (+)
G115640 NA non-coding upstream 2939 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 199208 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 206487 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 376424 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 1010422 7085574 ~ 7086966 (+)
G115679 NA non-coding downstream 180226 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 237887 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 588967 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 747891 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 754352 8868542 ~ 8870342 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 202939 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1349950 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1936772 6155488 ~ 6160616 (+)
G115299 NA other upstream 2146371 5949463 ~ 5951017 (+)
G115049 NA other upstream 3333483 4761518 ~ 4763905 (+)
G115648 NA other downstream 5588 8119778 ~ 8122171 (+)
G115789 NA other downstream 579174 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1085467 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1125621 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1325467 9439657 ~ 9447144 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location