AMCG00018319 (LOC107568381,LOC106511642,LOC104967806)


Basic Information

Item Value
gene id AMCG00018319
gene name LOC107568381,LOC106511642,LOC104967806
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8082972 ~ 8089974 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018319
CGGGGCAGCACGGGATTAATTCCGCGACGGACAGCTCTGAAGCCACAGCAAACACGGCCGTTTACAGTACACAGAATTAGACTGCATTTACTCAAGTGCATCTTCATTGAGGATTTGAAATACCCAGAGACACGGACACCTCTTCCCACAGCACGGCACCAGGGTTAGGTTGTCAGTAAAACAAGTTTCAGAAGGTCAATAAGCCATCatatggttattattttatgtaatgacCGCTTTTAATTAAACCTATCCGTGGCCTAATGTTTAAGTATTCTTTGGAGAGTAGGGTTGGTAACATGACGTGCAGTGGCTGCATCCACTAAAACGAAACAAAGTAACAAGGGTTTCGGCTGCAGTAGTTCCTCCGCTCCGGCGCGCTCGCCCATCATGGTGCTGAAGATCTTCTTCCCTCGGTGCTGCAACTTGGCCGACAGCGGGCTGCTCATCGGGCGCTGGCTTCCCGGGCACGATGCCGCCGTGGTGTTGGCGGTGATCCACTTCCCCTTCATCCCCGGTCAGGTGAAGAAGTACCTGAGCAAGTTGCAGAGCCAGACCCAGGTGGACCTGACTGTGCTGGGGTCCTGGAGCAGGCCCAAGGAGGGCCAGGAAGGGCTGGCCAGCTTCCTGCAGGAGCTGAGCACTATCTTCCCTCAGGGCCGCTGGCTGCAGATCAGCCGGGAGAAAGGCGAAAAGGGCTTCCGCTGCCAGGTCACCACTAGAGGTGGCGAGGGCGGACAGGAAGAGGTGGAGGTAGAGGAGGAGGtagaagagggggaggagaaggagaagaatgGGGAGAAGGACAAGGTGATCTTCATCCACTACGACCAGCGCAAGGTCATGCTCTCCCAGCTTCACCCTGCCAAGGGCCTCAATCTGAACTCCCCAGCCAAGGTGTCTGAGCTCAGGCTGGTCTTCCAGACAGTGGCCCAGAGCCAGGCGCTCTTCTTCATAGACAAGTACGACGAGGGGCCCCTGAAGCTAACGCACTGGCAGTCCGAGGGCAGGGAGGCCAGTATCCTTGTGGAGCTGGCCAAGCAAGCCTTCGTCCCGCTGTGCCGGCTGCTGACCTGGCTGCTGTCCTGGTGGAACTGGCTGAGCAGTGCCTGGCTCCTGAACGTGTGGCCCGTGCGCTTTGTGTCCAGTAAGCTGTCCACCTGTATCCAGATCAGCCATCGCACCGAGCACCTGCAGACCGTCAGCTCTACCAAGAAAGCAGAAGAGCACATGGAGTTCATGAGGAAGGCCAACATCTTTGTGTCCTTCGTGGTTGACGTGGCTCTGGGCCTGCTGCTCATCTCTTGGCTCTACCGAAAGAACCGGATCGGCCAGCTGGCTGACACCCTCGTTCCCGTGGCTGACCATGTGGCCAAAGAGCTTCAGGAGCTTCTGCAGTGGCTGATGGGAGCTCCAGCGGGGCTGAAGATGAACCGGGCCTTGGACCAGGTGCTGGGCCGCTTCTTCCTGTACCACATCCACCTGTGGATCAGCTATATCCACCTGATGTCCCCCTTCATTGAGATGATCCTGTGGTACGTGGGCCTGTCTGCTTGCCTGGGGTTGACCTTTGCCCTCTCCATCCTCTCTGACATCGTGGCCCTGCTCACCTTCCACATCTACTGCTTCTACGTCTACGGAGCCAGGCTCTACTGCCTGAAGATCGTCGGCCTGTCCTCTCTGTGGCGGCTGTTCCGTGGAAAGAAGTGGAACGTGCTCCGCCAGCGGGTGGACTCCTGCTCATACGACCTGGACCAGCTGTTCATCGGGACTCTGCTGTTCACTATCCTGCTGTTCCTGCTGCCGACCACTGCGCTGTATTACCTGGTGTTCACGCTGCTCCGCCTGTTGGTGGTGCTGTTCCAGGGCCTGATTCACCTCAGTGTGGATTTCATTAACTCCTTCCCTCTGTTTGCCATGGGACTCCGAATCTGCCGGCCTTACAGACTGGCAGcCGGAGTGAAGTTCAGAGTcctgcaggaggagccaggaaAATCCCTTCACCTGCTGATGGAGATCAACCCTCTGCCGTGCAGCGCCGTTCTGAAGTGGTACCGGACCCCCACCTACAGCTGCTACCCCAAGGACTCCTGGGGGGCTCTGTGCAAGAAGCTGTTCGTCGGGGAACTCATCTACCCCTGGAGACACAAGAGCACCAAGACAGACTGAGCCGCTGGGGGGGAGGCCGGAGGTGCAGAAGGACCATGCGGCACGTGCTGTGCTCACAAGCGGGCAGAGCTGACAACTGCCAACAAAATGCTAAAAAGAACTGAGAAACAAAAGAATGTCTAACCCAGCAAAGACTGTTAAGCTCAGAAGAGAGAGATCTCTGTTGATTCAGAGTCATGTGAGAGCTAGAGATCTTTCCCATTCGTAACTCACGTGTAGCAGTAGAAATGTCCCTGGCGCCGTGTTGAAAAACGTCCCTGTTTACTAAACCAGCGTGTAGAAGTGATCGAGGACGAGTCGCGATCGCTTTTTCTGTAGAGAGCCAGAACATTTCTCTTGCTTTGTGTCCAGAATGTGCAGCGCTGAGCTGTACACAAGAACTGCACTACTTTGGTATATTTTAACACTTgaatgacatttacattttaattaaattgagagGTTTATTTAATAGTATTGAACAGGGTCTTTagataataaatgaatgaattaatcagTATCACTCCATTCcttcagtatttatttagaatAGATGAGTAGATGGTTTCACTACTGATTTAAGAAGCAGCCAGCATTGTTACTAAATAGGGGGCATCACATCGATAATACTGAACACGATGAGCCACTATTAATGTAGGTGTAAAGTTTAACtagctgattttattttgcactaGGATTAATTGGGTTTCTCTTTCCCACTCTGTGGATTCCCTGTGGGCCAGTCGTGTTTTTTCAGGTGTAGCCCCCTATGCGCCGGTGCTTGGCTGAGCTCAGGGATATCTAGGTGTTGGCGAATACACTAATGAGCCCCAGCTGTGGCTGATCCCGGCAGAGTATATAGATCAGTCATCtcagtcctgctgttttttttagctGACCATGTTTCAGAGTTATTCTCCGATTGCTCTAAATGGGTGCAAATCCATCATTTGTCGTTAGCATTCCAAGCACAGCTTAAATGTctgttgcatttgtatttgaaaagcattgacctgcttttttttttttttatcccctcTGTGAGTGCTCGCTTCCACTCTCCCTGTCAAGCTGAGTTAATTCCAGTTCCCAGCTCCCGATAAGGAGATTTATATATACCAAATCGCATATTATATTTTACCGAGTTGTGTCGATCCAAGGTAGGCGCTGTAAATTCAAGACGGAAAGGATGTCTGGAATTTACTGTCCCTATTCCGAATTCGCCGTGCATTCCTAGGGGCCTGTGAGtgattttacataaaattaatttaatgctactttggtttgtgttcattttaaattgtttgttgTCAATCCTGCTACTTTTCCACTCTtgagaataaaaaacacttgATGGTATGAGTGTTGTGCCAGCGTCTATTCTGAATGTTTACTGTCACTGTGGCcgtgctgtattttaaattatgccaGCTTTATGGCACACCTACGGTACGTTTGAAATATTTCTTCCTCTCTAAAGCAACA

Function

NR:

description
PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit Q-like

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K03860 PIGQ, GPI1; phosphatidylinositol N-acetylglucosaminyltransferase subunit Q

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018319 True 3633 mRNA 0.51 11 8082972 8089974

Neighbor

gene id symbol gene type direction distance location
AMCG00018313 NA coding upstream 4198 8074678 ~ 8078774 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding upstream 8811 8050410 ~ 8074161 (+)
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding upstream 204779 7845467 ~ 7878193 (+)
AMCG00018308 NA coding upstream 268181 7804239 ~ 7814791 (+)
AMCG00018305 NA coding upstream 336488 7737626 ~ 7746484 (+)
AMCG00018317 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266 coding downstream 7414 8097388 ~ 8114190 (+)
AMCG00018318 NA coding downstream 26095 8116069 ~ 8118432 (+)
AMCG00018321 NA coding downstream 50033 8140007 ~ 8150550 (+)
AMCG00018320 LOC104942092 coding downstream 64836 8154810 ~ 8167750 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding downstream 200027 8290001 ~ 8315541 (+)
G115591 NA non-coding upstream 184792 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 192071 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 362008 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 996006 7085574 ~ 7086966 (+)
G115514 NA non-coding upstream 1244111 6837706 ~ 6838861 (+)
G115640 NA non-coding downstream 4226 8094200 ~ 8094449 (+)
G115679 NA non-coding downstream 204442 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 262103 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 613183 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 772107 8862081 ~ 8862511 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 188523 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1335534 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1922356 6155488 ~ 6160616 (+)
G115299 NA other upstream 2131955 5949463 ~ 5951017 (+)
G115049 NA other upstream 3319067 4761518 ~ 4763905 (+)
G115648 NA other downstream 29804 8119778 ~ 8122171 (+)
G115789 NA other downstream 603390 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1109683 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1149837 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1349683 9439657 ~ 9447144 (+)

Expression


Co-expression Network